Sequence
atgc intronic sequence ATGC exonic sequenceTATTTGGAAGCTCGAAACTGGAACGTAGACAAGTCCAAGAAGATGTTGGAGGAGACACTAAGGTGGAGATCAACCTATAAGCCAGAAGAAATTCGCTGGGtaagttatggcttaattaggttctcattttagatacagtggtgcatagatatgaactgaaatactataataaggtaaatatgtcatttttcagc
Basic information
species | Glycine max |
transcript | GLYMA17G36850.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G36850.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g12420.t01 (Vitis vinifera), 5'ss of exon 3
-TATTTGGAAGCTCGAAACTGGAACGTAGACAAGTCCAAGAAGATGTTGGAGGAGACACTAAGGTGGAGATCAACCTATAAGCCAGAAGAAATTCGCTGGGtaagttatggcttaattaggttctcattttagatacagt--ggtgcatagatatgaactgaaatactataataaggtaaatatgtcatttttcagc-----
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ATATTTGGAAGCTCGGAACTGGAATGTAGACAAGTCAAAGAAAATGCTGGAAGAAACACTGACATGGAGGTCAACCTATAAGCCTGAGGAAATCCGCTGGgtaagtt--gataaattttccttcatgttgaagccacccccagccgagctggcttgattgccaaacttcctataagcaatttctcctagaatgccatcaaga
upper sequence: GLYMA17G36850.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ14676 (Selaginella moellendorffii), 5'ss of exon 2
-TATTTGGAAGCTCGAAACTGGAACGTAGACAAGTCCAAGAAGATGTTGGAGGAGACACTAAGGTGGAGATCAACCTATAAGCCAGAAGAAATTCGCTGGGtaagttatggcttaattaggttctcattttagatacagtggtgcatagatatgaactgaaatactataataaggtaaatatgtcatttttcagc
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ATTCTTGAGAGCTCGCAACTGGAGCGTCAGGAAAGCCGAGAAGATGCTCAAGGAGGCCCTAAGTTGGAGAGCATCCTACAAGCCGGAAGAAATTCGCTGGgtaag--aagagttccttcttctttc-ttttgttcttctcagtgcaaagaaatcttccag-----------------------------------
upper sequence: GLYMA17G36850.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ26338 (Selaginella moellendorffii), 5'ss of exon 2
-TATTTGGAAGCTCGAAACTGGAACGTAGACAAGTCCAAGAAGATGTTGGAGGAGACACTAAGGTGGAGATCAACCTATAAGCCAGAAGAAATTCGCTGGGtaagttatggcttaattaggttctcattttagatacagtggtgcatagatatgaactgaaatactataataaggtaaatatgtcatttttcagc
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ATTCTTGAGAGCTCGCAACTGGAGCGTCAGGAAAGCCGAGAAGATGCTCAAGGAGGCCCTAAGCTGGAGAGCATCCTACAAGCCGGAAGAAATTCGCTGGgtaag--aagagttccttcttctttc-ttttgttcttctcagtgcaaagaaatcttccag-----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192308454|gb|FK002826.1|FK002826EST: GGAGACACTAAGGTGGAGATCAACCTATAAGCCAGAGGAAATTCGCTGGC ATGAGGTTGCAATAGAAGGAGAGACTGGGAAATTGTATAGAGCAAATTTTC
genomic: GGAGACACTAAGGTGGAGATCAACCTATAAGCCAGAAGAAATTCGCTGGGtaagttatgg ... atttttcagcATGAGGTTGCAATAGAAGGAGAGACTGGGAAATTGTATAGAGCAAATTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTTGGAAGCTCGAAACTGGAACGTAGACAAGTCCAAGAAGATGTTGGAGGAGACACTAAGGTGGAGATCAACCTATAAGCCAGAAGAAATTCGCTGGGtaagttatggcttaattaggttctcattttagatacagtggtgcatagatatgaactgaaatactataataaggtaaatatgtcatttttcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA