1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATGTGTTTGCGATGCCTCAGAGTGGGACCGGTGTTAGCGTTGAAGCTGTTGATCATGTTTTTCAGACTAATATGCTTGATATGTTGAAGCAGACTGGAAggtacttttttgggtttgttttgttgttttttttagtgaaggagggtttggttgccgttttttgctgcgtggtttatacatgtgtgggttgttttttgttgtatgatagttgaaacgttggcgttttgtcgttgca
species | Glycine max |
transcript | GLYMA17G36230.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGATCATGTTTTTCAGACTAATATGCTTGATATGTTGAAGCAGACTGGAA GGCCGGAGATGGTTGTGGGGTGGTATCACTCGCATCCTGGATTTGGGTGTTEST: gi|19053660|gb|BM732327.1|BM732327
genomic: TGATCATGTTTTTCAGACTAATATGCTTGATATGTTGAAGCAGACTGGAAggtacttttt ... tgtcgttgcaGGCCGGAGATGGTTGTGGGGTGGTATCACTCGCATCCTGGATTTGGGTGTT
EST: TGATCATGTTTTTCAGACTAATATGCTTGATATGTTGAAGCAGACTGGAA GGCCGGAGATGGTTGTGGGGTGGTATCACTCGCATCCTGGATTTGGGTGTTEST: gi|213617970|gb|DB957395.1|DB957395
genomic: TGATCATGTTTTTCAGACTAATATGCTTGATATGTTGAAGCAGACTGGAAggtacttttt ... tgtcgttgcaGGCCGGAGATGGTTGTGGGGTGGTATCACTCGCATCCTGGATTTGGGTGTT
EST: TGATCATGTTTTTCAGACTAATATGCTTGATATGTTGAAGCAGACTGGAA GGCCGGAGATGGTTGTGGGGTGGTATCACTCGCATCCTGGATTTGGGTGTTEST: gi|192321391|gb|FK012824.1|FK012824
genomic: TGATCATGTTTTTCAGACTAATATGCTTGATATGTTGAAGCAGACTGGAAggtacttttt ... tgtcgttgcaGGCCGGAGATGGTTGTGGGGTGGTATCACTCGCATCCTGGATTTGGGTGTT
EST: TTTTTCAGACTAATATGCTTGATATGTTGAAGCAGACTGGAA GGCCGGAGATGGTTGTGGGGTGGTATCACTCGCATCCTGGATTTGGGTGTT
genomic: TTTTTCAGACTAATATGCTTGATATGTTGAAGCAGACTGGAAggtacttttt ... tgtcgttgcaGGCCGGAGATGGTTGTGGGGTGGTATCACTCGCATCCTGGATTTGGGTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTGTTTGCGATGCCTCAGAGTGGGACCGGTGTTAGCGTTGAAGCTGTTGATCATGTTTTTCAGACTAATATGCTTGATATGTTGAAGCAGACTGGAAggtacttttttgggtttgttttgttgttttttttagtgaaggagggtttggttgccgttttttgctgcgtggtttatacatgtgtgggttgttttttgttgtatgatagttgaaacgttggcgttttgtcgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC