1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AATATTCAACCTGTGATATGGGGTACCTCAATTCAGTTCTGTCCTCTTCAAGCCAGGTTCATGCTGCAGAAGATTCACCTGTCAGTGGAGGGGGCCTCAGgtttgtgttgtatccatctttctttagatctagaattggttgaatgtgctgaagaattggtgtgtgtttttttaatggttacaattattgttgttggtta...
species | Glycine max |
transcript | GLYMA17G33690.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCCAGGTTCATGCTGCAGAAGATTCACCTGTCAGTGGAGGGGGCCTCAG TCAGAATGGAAAATTCAGCTATGGGTATGCTAGCTCCCCTGGCAAGAGATCEST: gi|298177029|gb|HO023390.1|HO023390
genomic: AGCCAGGTTCATGCTGCAGAAGATTCACCTGTCAGTGGAGGGGGCCTCAGgtttgtgttg ... gtaactgcagTCAGAATGGAAAATTCAGCTATGGGTATGCTAGCTCCCCTGGCAAGAGATC
EST: AGCCAGGTTCATGCTGCAGAAGATTCACCTGTCAGTGGAGGGGGCCTCAG TCAGAATGGAAAATTCAGCTATGGGTATGCTAGCTCCCCTGGCAAGAGATCEST: gi|27427212|gb|CA938732.1|CA938732
genomic: AGCCAGGTTCATGCTGCAGAAGATTCACCTGTCAGTGGAGGGGGCCTCAGgtttgtgttg ... gtaactgcagTCAGAATGGAAAATTCAGCTATGGGTATGCTAGCTCCCCTGGCAAGAGATC
EST: AGCCAGGTTCATGCTGCAGAAGATTCACCTGTCAGTGGAGGGGGCCTCAG TCAGAATGGAAAATTCAGCTATGGGTATGCTAGCTCCCCTGGCAAGAGATC
genomic: AGCCAGGTTCATGCTGCAGAAGATTCACCTGTCAGTGGAGGGGGCCTCAGgtttgtgttg ... gtaactgcagTCAGAATGGAAAATTCAGCTATGGGTATGCTAGCTCCCCTGGCAAGAGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATATTCAACCTGTGATATGGGGTACCTCAATTCAGTTCTGTCCTCTTCAAGCCAGGTTCATGCTGCAGAAGATTCACCTGTCAGTGGAGGGGGCCTCAGgtttgtgttgtatccatctttctttagatctagaattggttgaatgtgctgaagaattggtgtgtgtttttttaatggttacaattattgttgttggtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG