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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAGCCCATGCTTGGAGGCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGGgtatgtactatatagtaataataactaaatttcttgcttcaactttagatacggttttataagtgattttggagattttatataattagaattagagttt...

Basic information

species Glycine max
transcript GLYMA17G33050.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332683|gb|FK025340.1|FK025340
EST:     GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGG                         TCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAA
genomic: GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGGgtatgtacta ... tttgtttcagTCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAA
EST: gi|120532068|gb|EH260201.1|EH260201
EST:     GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGG                         TCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAA
genomic: GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGGgtatgtacta ... tttgtttcagTCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAA
EST: gi|207720079|gb|GD702578.1|GD702578
EST:     GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGG                         TCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAA
genomic: GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGGgtatgtacta ... tttgtttcagTCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAA
EST: gi|120532359|gb|EH260492.1|EH260492
EST:     GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGG                         TCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAA
genomic: GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGGgtatgtacta ... tttgtttcagTCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAA
EST: gi|209711312|gb|BW683849.1|BW683849
EST:     GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGG                         TCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAA
genomic: GCAACACTTTGAGATTTCACAAAGGACCCAATTCCTTCTCTAGTTCAAGGgtatgtacta ... tttgtttcagTCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAATGTATCTCGGTTTGAA