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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGATGAAAATCTGACAACACCGTCATCGGCAAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAGgttgtgtatattatgtccttttctatatgctctaaacatttcacaagtttaatctcctgtgtctgctaatagtacttttttctttgcaatatttcaaaaag

Basic information

species Glycine max
transcript GLYMA17G31400.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G31400.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0008g05130.t01 (Vitis vinifera), 5'ss of exon 2
GATGATGAAAATCTGACAACACCGTCATCGGCAAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAGgttgtgtatatt-atgtccttttctatatgct------ctaaacatttcacaagtttaatctcctgtgtctgctaatagtacttttttctttgcaatatttcaaaaag----------------------------------
|| |||| ||    | ||||||| ||||| || |||||||| ||||||||||||||||| | |||||||||| |||||||||| || || || |||||||||   ||| || ||  |  | | | |||| |      || | |  ||     |  |   | | | |    |||   | |  ||  |||||   || |    ||                                      
GAAGATGGAAG---GTCAACACCATCATCAGCGAGGCACAAGAGAGGTTGCAATTGCAAGAAGTCAATGTGTTTGAAAAAATACTGCGAGTGCTATCAGgtttcatatgttgataccactgtatttatgatatcatgctcatctcttttttggcctttacacttattctagcttggatttgttgcttcttcataaaaggctaatgttggatgttctgggatttgttgctttttcttaaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208197744|gb|GD998923.1|GD998923
EST:     GCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAG                         GCTAATGTTGGATGCTCTAGTGGATGCCGATGTGAGGGATGTAAGAATGTC
genomic: GCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAGgttgtgtata ... tttcaaaaagGCTAATGTTGGATGCTCTAGTGGATGCCGATGTGAGGGATGTAAGAATGTC
EST: gi|207760710|gb|GD734033.1|GD734033
EST:     GCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAG                         GCTAATGTTGGATGCTCTAGTGGATGCCGATGTGAGGGATGTAAGAATGTC
genomic: GCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAGgttgtgtata ... tttcaaaaagGCTAATGTTGGATGCTCTAGTGGATGCCGATGTGAGGGATGTAAGAATGTC
EST: gi|208161115|gb|GD962155.1|GD962155
EST:     GCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAG                         GCTAATGTTGGATGCTCTAGTGGATGCCGATGTGAGGGATGTAAGAATGTC
genomic: GCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAGgttgtgtata ... tttcaaaaagGCTAATGTTGGATGCTCTAGTGGATGCCGATGTGAGGGATGTAAGAATGTC
EST: gi|21995121|gb|BQ786649.1|BQ786649
EST:     GCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAG                         GCTAATGTTGGATGCTCTAGTGGATGCCGATGTGAGGGATGTAAGAATGTC
genomic: GCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAGgttgtgtata ... tttcaaaaagGCTAATGTTGGATGCTCTAGTGGATGCCGATGTGAGGGATGTAAGAATGTC