1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCATATTGCACACGATCGTCTTTCACCGTGCCTTGGGTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTATgtacttttttaatctcaatttgttgatgttatcacgtgtgcgcgagttattctcttagaaatcctatttaactgtgtcttatgtacaataaaatacaccg...
species | Glycine max |
transcript | GLYMA17G21590.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTAT GTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAGEST: gi|213596239|gb|DB960171.1|DB960171
genomic: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTATgtactttttt ... ctgtgtgaagGTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAG
EST: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTAT GTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAGEST: gi|33387938|gb|CA851145.1|CA851145
genomic: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTATgtactttttt ... ctgtgtgaagGTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAG
EST: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTAT GTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAGEST: gi|42722958|gb|CK768857.1|CK768857
genomic: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTATgtactttttt ... ctgtgtgaagGTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAG
EST: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTAT GTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAGEST: gi|151412937|gb|EV282749.1|EV282749
genomic: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTATgtactttttt ... ctgtgtgaagGTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAG
EST: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTAT GTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAGEST: gi|9564745|gb|BE474254.1|BE474254
genomic: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTATgtactttttt ... ctgtgtgaagGTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAG
EST: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTAT GTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAGEST: gi|15284740|gb|BI468631.1|BI468631
genomic: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTATgtactttttt ... ctgtgtgaagGTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAG
EST: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTAT GTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAGEST: gi|298184471|gb|HO029684.1|HO029684
genomic: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTATgtactttttt ... ctgtgtgaagGTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAG
EST: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTAT GTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAGEST: gi|298180729|gb|HO022168.1|HO022168
genomic: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTATgtactttttt ... ctgtgtgaagGTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAG
EST: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTAT GTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAGEST: gi|298171918|gb|HO021510.1|HO021510
genomic: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTATgtactttttt ... ctgtgtgaagGTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAG
EST: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTAT GTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAGEST: gi|16347736|gb|BI973331.1|BI973331
genomic: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTATgtactttttt ... ctgtgtgaagGTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAG
EST: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTAT GTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAG
genomic: GTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTATgtactttttt ... ctgtgtgaagGTGCAATGTGGAGAGGCAGAGCTTGAAAAGAAAATAGATGAGAAGATTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATATTGCACACGATCGTCTTTCACCGTGCCTTGGGTCTCGTGCGCCCTAAAGACGTTGACTTGGAGCTATTTGACGTCACTTATgtacttttttaatctcaatttgttgatgttatcacgtgtgcgcgagttattctcttagaaatcctatttaactgtgtcttatgtacaataaaatacaccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT