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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAGgttggttatgtttttcaaatatttatttaatatacggtttgcgacagagtttttggcgcatgatcaaggtatttggagtgttcacgaccgcaattgttaa...

Basic information

species Glycine max
transcript GLYMA17G20610.4
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G20610.4 (Glycine max), 5'ss of exon 2
lower sequence: AT3G50500.1 (Arabidopsis thaliana), 5'ss of exon 2
ATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAGgttggttatgtttttca--aatatttatttaatatacggtttgcgacagagtttttggcgcatgatcaaggtatttggagtgttcacgaccgcaattgttaa-
||||||||||||||  ||||||| || || ||||| || ||  |||| |||||||| |||||||| |||||||||||    |||  |   |    || ||| ||   | |  | ||    |   |||   ||  |     | |  || | |   ||||        | ||| ||| | 
ATTGATGAAAATGTTCAGAGGGAGATTATCAATCATAGATCATTGAGACATCCTAATATTGTTAGGTTTAAAGAGgtataatataatacaccttgatgtttcttctgtgtgtgtttgtgtattaagtcagtgtggt----ttagagtttgttttgtgtgtgtttttgtaatggtttag

upper sequence: GLYMA17G20610.4 (Glycine max), 5'ss of exon 2
lower sequence: AT5G66880.1 (Arabidopsis thaliana), 5'ss of exon 2
ATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAGgttggttatgtttttcaaatatttatttaatatacggtttgcgacagagtttttggcgcatgatcaaggtatttggagtgttcacgaccgcaattgttaa---
||||||||||||||  | ||||| |||||||| |||||||| || ||||||||||| ||||| |||||||||||||     ||   |||  | |  ||| || | ||   |  ||     |   | ||  ||   |||      | |||  |    |       | | |||   |   
ATTGATGAAAATGTTCAAAGGGAGATCATTAACCACAGGTCACTAAGGCATCCTAATATTGTCAGATTTAAAGAGg-----taaaatttatacacttttcttcagtacttgtctttttggaatttgttaagccagtgac-----tcttttaaactctgtttcttgtacttgaggatag

upper sequence: GLYMA17G20610.4 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0197g00080.t01 (Vitis vinifera), 5'ss of exon 2
ATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAGgttggttatgtttttcaaatatttatttaatatacggtttgcgacagagtttttggcgcatgatcaaggtatttggagtgttcacgaccgcaattgttaa------
||||||||||||||  | |||||||| |||||||| |||||||| ||||| || ||||||||||| |||||||||||| | |     ||||  || ||| | |||| ||     ||| |     |||   ||       | |   |||  || || |   |   || ||| || |      
ATTGATGAAAATGTTCAAAGGGAAATAATTAATCATAGGTCTCTCAGGCACCCCAACATTGTTAGGTTTAAAGAGgtttgat---catttcttatcttt-tataatttataaaatgctattc--tttccagcatggtgaccacccattctgactgatgctgggtgctatttttcaaattaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15337019|gb|BI497675.1|BI497675
EST:     ATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAG                         CTTTAATGTTTTTGGAGTGTCTTGCGACGGCAATTGTGACCGCATTTGTTT
genomic: ATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAGgttggttatg ... ttggccgcagCTTTAATGTTTTTGGAGTGTCTTGCGACGGCAATTGTGACCGCATATGTTT