1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGGGGAGAGCTCTTTGAGAAAATCTGCAATGCTGGGCGTTTTACCGAGGATGAGgttcttatttaatttgtttacttattctacacctgaatgctataagtttgtacttattctacgctagtttgtaacccgttgttatgattcag
species | Glycine max |
transcript | GLYMA17G20610.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGAGCTCTTTGAGAAAATCTGCAATGCTGGGCGTTTTACCGAGGATGAG GCTCGATTCTTCTTTCAGCAACTCATATCTGGGGTCAGCTATTGCCATGCTEST: gi|254320505|gb|GR826954.1|GR826954
genomic: GAGAGCTCTTTGAGAAAATCTGCAATGCTGGGCGTTTTACCGAGGATGAGgttcttattt ... tatgattcagGCTCGATTCTTCTTTCAGCAACTCATATCTGGGGTCAGCTATTGCCATGCT
EST: GAGAGCTCTTTGAGAAAATCTGCAATGCTGGGCGTTTTACCGAGGATGAG GCTCGATTCTTCTTTCAGCAACTCATATCTGGGGTCAGCTATTGCCATGCTEST: gi|15337019|gb|BI497675.1|BI497675
genomic: GAGAGCTCTTTGAGAAAATCTGCAATGCTGGGCGTTTTACCGAGGATGAGgttcttattt ... tatgattcagGCTCGATTCTTCTTTCAGCAACTCATATCTGGGGTCAGCTATTGCCATGCT
EST: GAGAGCTCTTTGAGAAAATCTGCAATGCTGGGCGTTTTACCGAGGATGAG GCTCGATTCTTCTTTCAGCAACTCATATCTGGGGTCAGCTATTGCCATGCTEST: gi|120533008|gb|EH261141.1|EH261141
genomic: GAGAGCTCTTTGAGAAAATCTGCAATGCTGGGCGTTTTACCGAGGATGAGgttcttattt ... tatgattcagGCTCGATTCTTCTTTCAGCAACTCATATCTGGGGTCAGCTATTGCCATGCT
EST: GAGAGCTCTTTGAGAAAATCTGCAATGCTGGGCG-TTTACCGAGGATGAG GCTCGATTCTTCTTTCAGCAACTCATATCTGGGGTCAGCTATTGCCATGCT
genomic: GAGAGCTCTTTGAGAAAATCTGCAATGCTGGGCGTTTTACCGAGGATGAGgttcttattt ... tatgattcagGCTCGATTCTTCTTTCAGCAACTCATATCTGGGGTCAGCTATTGCCATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGGGGAGAGCTCTTTGAGAAAATCTGCAATGCTGGGCGTTTTACCGAGGATGAGgttcttatttaatttgtttacttattctacacctgaatgctataagtttgtacttattctacgctagtttgtaacccgttgttatgattcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG