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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTTGGTAATGTCATAAGTGCACTAGGGGATGAGAAAAAGCGAAAGGAGGGTGTACATGTTCCTTATCGGGATAGCAAACTCACTCGACTCTTACAGgtgagaatagcattttgttgtttgacatactagttatattatatatataaatacacatcatctcattcatcaatgtatggttcaaacatcaagatttgct...

Basic information

species Glycine max
transcript GLYMA17G18540.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G18540.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os09g02650.1 (Oryza sativa), 5'ss of exon 6
TGCTCTTGGTAATGTCATAAGTGCACTAGGGGATGAGAAAAAGCGAAAGGAGGGTGTACATGTTCCTTATCGGGATAGCAAACTCACTCGACTCTTACAGgt------------------gagaatagcattttgttgtttgacatactagttata-ttatatatataaatacacatcatctca--ttcatcaatgtatggt--tcaaacatcaagatttgct--------------------------------------------------
||||||||| |||||||| ||||| || || |||||||||||| | || || || |  ||||||||||| ||||| |||||||||||||| ||  | |||||                  | | | ||   |||||       |||   | | |||  | | |  |  ||       || ||||  || |   || |||  |  |  ||  |    ||||  |                                                  
TGCTCTTGGCAATGTCATCAGTGCTCTCGGTGATGAGAAAAAGAGGAAAGAAGGCGCTCATGTTCCTTACCGGGACAGCAAACTCACTCGCCTTCTGCAGgtattattcttctgacccaagtgcacaggcctttgtacagaagcattgaattcatagctctgttcaagaagtagggccagctcacatttaagcatatataatacttgaatctttgcatttagtttctttcattttactaactaatctgttttatatctattttattattatag

upper sequence: GLYMA17G18540.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G026218_T02 (Zea mays), 5'ss of exon 6
TGCTCTTGGTAATGTCATAAGTGCACTAGGGGATGAGAAAAAGCGAAAGGAGGGTGTACATGTTCCTTATCGGGATAGCAAACTCACTCGACTCTTACAGgtgagaatagcattttgttgtttgacatactagttatattatatatataaatacacatcatctcattcatca-atgtatggtt-caaacatcaagatttgct
 ||||| || |||||||||||||| || || |||||||||||  |||| || ||||  || |||||||||||||| ||||| ||||| || || || |||||   | |     |    | |   |   |  |   | |||   | |||  |  ||| | ||   | |  ||| |  ||| |||     || |  |  || | 
CGCTCTCGGCAATGTCATAAGTGCTCTTGGAGATGAGAAAAAAAGAAAAGAAGGTGCTCACGTTCCTTATCGGGACAGCAAGCTCACCCGTCTTTTGCAGgtattatttttggtcacctata-aatgcaaaaagaaaattgattttatgga-gcactttatagtagtgttcagaaatatagttatgctcaactcgtctttca

upper sequence: GLYMA17G18540.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G50240.1 (Arabidopsis thaliana), 5'ss of exon 6
TGCTCTTGGTAATGTCATAAGTGCACTAGGGGATGAGAAAAAGCGAAAGGAGGGTGTACATGTTCCTTATCGGGATAGCAAACTCACTCGACTCTTACAGgtgagaatagcattttgttgtttgacatacta------gttatattatatatataaatacacatcatctcattcatcaatgtatggttcaaacatcaagatttgct--------------------------------------------------------------
||| ||||||||||| || ||||| || ||||||||||||| |||||| || |||| ||||||||| || || ||||| ||||| |||||  | || |||||     |     ||||   ||  |||| ||       || | | | || |||| |  ||    ||| | |||  | |   | | ||      |     ||||                                                                 
TGCACTTGGTAATGTTATCAGTGCGCTTGGGGATGAGAAAAGGCGAAAAGAAGGTGCACATGTTCCATACCGTGATAGTAAACTTACTCGGTTATTGCAGgttcatttctatctttgcacttctacatcctgatatgtgtaacactgtacatattataactatacatatgatttgtaacactgtagtatctttactggcatttaactatacatacatatgattcatgtgacaaattttccattaaagatgtcctttacattactgcag

upper sequence: GLYMA17G18540.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0031g00130.t01 (Vitis vinifera), 5'ss of exon 6
TGCTCTTGGTAATGTCATAAGTGCACTAGGGGATGAGAAAAAGCGAAAGGAGGGTGTACATGTTCCTTATCGGGATAGCAAACTCACTCGACTCTTACAGgtgagaatagcattttgttgtttgacatactagttatattatatatataaatacacatcatctcattcatcaatgtatggttcaaacatcaagatttgct---
||| |||||||||||||| |||||||| ||||||||||||||||| || || ||||| |||||||||||||| ||||| ||||| |||||||| || |||||  ||  |  ||| || |  |  | ||  |  || |   | ||||  |  |    |  |    ||||  || |   || ||    |||    |  || |   
TGCACTTGGTAATGTCATCAGTGCACTGGGGGATGAGAAAAAGCGGAAAGAAGGTGTGCATGTTCCTTATCGAGATAGTAAACTTACTCGACTTTTGCAGgtttgatcaatattgtgcttatctatatgatgtttctg--agatatgaagttgtttaggaataaattctgca-ttcctgattttttcatggcaaagtgatcaa

upper sequence: GLYMA17G18540.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ26093 (Selaginella moellendorffii), 5'ss of exon 6
TGCTCTTGGTAATGTCATAAGTGCACTAGGGGATGAGAAAAAGCGAAAGGAGGGTGTACATGTTCCTTATCGGGATAGCAAACTCACTCGACTCTTACAGgtgagaatagcat---tttgttgtttgacatactagttatattatatatataaatacacatcatctcattcatcaatgtatggttcaaacatcaagatttgct
 |||||||| |||||||| |||||  | || ||||| ||||| || || || || |  |||||||||||| ||||||||||||||||||| || || ||||| |   | || |   ||| || | |  | |  |    | |  |  | |  |                                                   
AGCTCTTGGAAATGTCATCAGTGCTTTGGGAGATGATAAAAAACGTAAAGAAGGAGGGCATGTTCCTTATAGGGATAGCAAACTCACTCGTCTATTGCAGgt-actgttgcgtaggttttttttattgcgttttgacaagaaaacctgtgcag--------------------------------------------------

upper sequence: GLYMA17G18540.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ10856 (Selaginella moellendorffii), 5'ss of exon 6
TGCTCTTGGTAATGTCATAAGTGCACTAGGGGATGAGAAAAAGCGAAAGGAGGGTGTACATGTTCCTTATCGGGATAGCAAACTCACTCGACTCTTACAGgtgagaata---gcattttgttgtttgacatactagttatattatatatataaatacacatcatctcattcatcaatgtatggttcaaacatcaagatttgct
 |||||||| |||||||| |||||  | || ||||| ||||| || || || || |  |||||||||||| ||||||||||||||||||| || || |||||     |       |||| || | |  | |  |    | |  |  | |  |                                                   
AGCTCTTGGAAATGTCATCAGTGCTTTGGGAGATGATAAAAAACGTAAAGAAGGAGGGCATGTTCCTTATAGGGATAGCAAACTCACTCGTCTATTGCAGgtactgttgcgtaggtttttttttattgcgttttgacaagaaaacctgtgcag--------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151399371|gb|EV269242.1|EV269242
EST:     AGGGTGTACATGTTCCTTATTGGGATAGCAAACTCACTCGACTCTTACAG                         GATTCACTTGGTGGAAACAGCAAAACTGTCATGATAG
genomic: AGGGTGTACATGTTCCTTATCGGGATAGCAAACTCACTCGACTCTTACAGgtgagaatag ... cttgttgcagGATTCACTTGGTGGAAACAGCAAAACTGTCATGATAG