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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCTCTTCTACTGGGTGGTCCTATTCTCACTTACAATGAGGAGACAGATATCTCATATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaacattttcattctgcaaaattattgtcataggttgtgttgtatggcttggtccattatttggtgttcttaacatatctttgttgctaatggtaaagatttggttttgtttgttttacttgcag

Basic information

species Glycine max
transcript GLYMA17G18430.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G18430.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0031g00030.t01 (Vitis vinifera), 5'ss of exon 2
ACTCCTCTTCTACTGGGTGGTCCTATTCTCACTTACAATGAGGAGACAGATATCTCATATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaacattttcattctgcaaaattattgtcataggttgtgttgtatggcttggtccattatttggtgttcttaacatatctttgttgctaatggtaaagatttggttttgtttgttttacttgcag
|||||| ||||||||| |||| || ||| | || || |||||||||||||||   || ||||| |||||||||||| | || || || | |||||||||||||  |||  |  ||| |  |   ||| |  ||| || | |  | || | || ||   |    | |||| | ||   | |||||| ||  |  |     ||||  ||   || | ||| ||          
ACTCCTTTTCTACTGGATGGTACTGTTCACTCTCACCATGAGGAGACAGATAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAGgtatcctataaccttcttaattttaaact--tgtgat-gatcatattttgtg-ctgcttttgctctttgttattgggatcatatccttagtttttgaactaaa--ttcatttctatttcttag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22933831|gb|BU550970.1|BU550970
EST:     TATCTCATATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAG                         CGCTATGATGTAAAGAGAGCACCACCAGAAACCACAAGCCTTTCAGTTTCA
genomic: TATCTCATATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaac ... ttacttgcagCGCTATGATGTAAAGAGAGCACCACCAGAAACCACAAGCCTTTCAGTTTCA
EST: gi|31472066|gb|CD414094.1|CD414094
EST:     TATCTCATATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAG                         CGCTATGATGTAAAGAGAGCACCACCAGAAACCACAAGCCTTTCAGTTTCA
genomic: TATCTCATATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaac ... ttacttgcagCGCTATGATGTAAAGAGAGCACCACCAGAAACCACAAGCCTTTCAGTTTCA
EST: gi|209714170|gb|BW679499.1|BW679499
EST:     TATCTCATATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAG                         CGCTATGATGTAAAGAGAGCACCACCAGAAACCACAAGCCTTTCAGTTTCA
genomic: TATCTCATATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaac ... ttacttgcagCGCTATGATGTAAAGAGAGCACCACCAGAAACCACAAGCCTTTCAGTTTCA