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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATGCTCTTTCTTTTACATGAGGATCAGCAATGTCTACATTGTCATTGTTGTTAGCAACAATGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAGgtactgtagctcaccttgttagggtgctgcttgtgcatgactttcttctatctagcttataattaatcctgttttggttgttgttaatgttttgttaaat...

Basic information

species Glycine max
transcript GLYMA17G16630.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G16630.3 (Glycine max), 5'ss of exon 2
lower sequence: AT5G46630.2 (Arabidopsis thaliana), 5'ss of exon 2
TGGATGCTCTTTCTTTTACATGAGGATCAGCAATGTCTACATTGTCATTGTTGTTAGCAACAATGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAGgtactgtagctcacct-tgttagggtgctgcttgtgcatgacttt--cttctatctagcttataattaatcctgttttggttgttgttaatgttttgttaaat------------
||| ||||| ||  |||| ||| | ||||||||||||||||| ||||||||||| || | |||||| ||||| ||||| |  ||||| |||||||||||||||   | | |    | | | |   |  |  |     ||   |||   |  | |  |  ||  ||   |  | | ||   |   |    ||  |   ||  ||            
TGGCTGCTCCTTTGTTTATATGCGAATCAGCAATGTCTACATCGTCATTGTTGTCAGTAGCAATGCTAATGTTGCTTGTGGATTCAAATTTGTTGTTGAGgtaaacttgtttttgtgtttcattttaatattccacaattgttttgattcttgttcaaatttcaagagagtcagattgattctatacacatactgcttttgattcacattttcag

upper sequence: GLYMA17G16630.3 (Glycine max), 5'ss of exon 2
lower sequence: PP1S197_28V6.1 (Physcomitrella patens), 5'ss of exon 2
TGGATGCTCTTTCTTTTACATGAGGATCAGCAATGTCTACATTGTCATTGTTGTTAGCAACAATGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAGgta----ctgtagctcaccttgttagggtgctgcttgtgcatgactttcttctatctagcttataattaatcctgttttggttgttgttaatgttttgttaaat
 |||||||||||  | |||||| | ||||  ||||| ||  | |||  ||||||||||| ||||||||||| ||| ||||||||||| ||  | |||||||||    ||||     | ||  ||    | |   ||     |   |||   | |  |   || |  |  | || | || ||  | ||| |       ||| || 
AGGATGCTCTTTTCTGTACATGCGCATCATGAATGTGTATGTAGTCGCTGTTGTTAGCAGCAATGCCAATGCCGCATGCGCTTTCAAATTCATGGTTGAGgtatattctgtgagcaagctctttcaattacgatttaaaact--ttttaaaccactttatttctt-tagacccagcttgggccggtgtgagatccaggttcaa-

upper sequence: GLYMA17G16630.3 (Glycine max), 5'ss of exon 2
lower sequence: PP1S54_156V6.1 (Physcomitrella patens), 5'ss of exon 2
TGGATGCTCTTTCTTTTACATGAGGATCAGCAATGTCTACATTGTCATTGTTGTTAGCAACAATGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAGgtactgtagctcaccttgttagggtgct-gcttgtgcatgactttcttctatctagcttataattaatcctgt--tttggttgttgttaatgttttgttaaat
 || |||||||| || |||||| | ||||||||||| ||||| |||| ||||||||||| |||||||||||  |||||||| ||||| || || |||||||||       | | |  ||       |  ||||      ||      |  ||| ||  |   ||     |||   |||    |  |  |  |||| |||    
AGGCTGCTCTTTTTTGTACATGCGCATCAGCAATGTGTACATAGTCACTGTTGTTAGCAGCAATGCCAATGCAGCTTGCGCCTTCAAATTCGTGGTTGAGgtatgtcttattagcaagtcttctcacaagctttcattggatccaacttgatccagtgttagatccggactgcaattttcacgaagccagagtttcgttt---

upper sequence: GLYMA17G16630.3 (Glycine max), 5'ss of exon 2
lower sequence: EFJ22278 (Selaginella moellendorffii), 5'ss of exon 2
TGGATGCTCTTTCTTTTACATGAGGATCAGCAATGTCTACATTGTCATTGTTGTTAGCAACAATGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAGgt----actgtagctcaccttgttagggtgctgcttgtgcatgactttcttctatctagcttataattaatcctgttttggttgttgttaatgttttgttaaat
||||||||| ||| | |||||| |||||||||||||||||||||| || || || |||| |||||||||||  || || ||| |||| |||||||| |||||    ||| |     |  |||||    |  | |||   | |  ||   ||||   | | || | |                                      
TGGATGCTCCTTCCTCTACATGCGGATCAGCAATGTCTACATTGTGATCGTCGTCAGCAGCAATGCCAATGCTGCCTGTGCTCTCAAATTTGTTGTGGAGgtctacactttcagagattttgtttctcttgttcttaaactttgctcctttctcgttggtttttcacag-----------------------------------

upper sequence: GLYMA17G16630.3 (Glycine max), 5'ss of exon 2
lower sequence: EFJ25669 (Selaginella moellendorffii), 5'ss of exon 2
TGGATGCTCTTTCTTTTACATGAGGATCAGCAATGTCTACATTGTCATTGTTGTTAGCAACAATGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAGgt----actgtagctcaccttgttagggtgctgcttgtgcatgactttcttctatctagcttataattaatcctgttttggttgttgttaatgttttgttaaat
||||||||| ||| | |||||| |||||||||||||||||||||| || || || |||| |||||||||||  || || ||| |||| ||||| || |||||     || |     |  |||||    |  | |||   | |  ||   ||||   | | || | |                                      
TGGATGCTCCTTCCTCTACATGCGGATCAGCAATGTCTACATTGTGATCGTCGTCAGCAGCAATGCCAATGCTGCCTGTGCTCTCAAATTTGTCGTGGAGgtctacgctttcagagattttgtttctcttgttcttaaactttgctcctttctcgttggtttttcacag-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699279|gb|BW670241.1|BW670241
EST:     TTGTTAGCAACAATGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAG                         GCTGTTGCATTGTTCCGATCATACTTTGGTGGAGTTTTTGACGAGGATGCA
genomic: TTGTTAGCAACAATGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAGgtactgtagc ... ttacttccagGCTGTTGCATTGTTCCGATCATACTTTGGTGGAGTTTTTGACGAGGATGCA