1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GTATGAGCAGTTCAAGCAAGAAGGGAAGCTGTTAGAGgtcatgtatttattgttggaattgaaaactgataaaaattagttggttgaatagttaaactgaattgaattgaacag
species | Glycine max |
transcript | GLYMA17G15510.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTATGAGCAGTTCAAGCAAGAAGGGAAGCTGTTAGAG GGCGAGGATTTGGACTTTGCTTACGACAGCATCTCTGCATTCTCTGATAGGEST: gi|213616699|gb|DB969195.1|DB969195
genomic: GTATGAGCAGTTCAAGCAAGAAGGGAAGCTGTTAGAGgtcatgtatt ... aattgaacagGGCGAGGATTTGGACTTTGCTTACGACAGCATCTCTGCATTCTCTGATAGG
EST: GTATGAGCAGTTCAAGCAAGAAGGGAAGCTGTTAGAG GGCGAGGATTTGGACTTTGCTTACGACAGCATCTCTGCATTCTCTGATAGGEST: gi|209709889|gb|BW668293.1|BW668293
genomic: GTATGAGCAGTTCAAGCAAGAAGGGAAGCTGTTAGAGgtcatgtatt ... aattgaacagGGCGAGGATTTGGACTTTGCTTACGACAGCATCTCTGCATTCTCTGATAGG
EST: GTATGAGCAGTTCAAGCAAGAAGGGAAGCTGTTAGAG GGCGAGGATTTGGACTTTGCTTACGACAGCATCTCTGCATTCTCTGATAGG
genomic: GTATGAGCAGTTCAAGCAAGAAGGGAAGCTGTTAGAGgtcatgtatt ... aattgaacagGGCGAGGATTTGGACTTTGCTTACGACAGCATCTCTGCATTCTCTGATAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGAGCAGTTCAAGCAAGAAGGGAAGCTGTTAGAGgtcatgtatttattgttggaattgaaaactgataaaaattagttggttgaatagttaaactgaattgaattgaacag
- - GAGCAG
- - - - - - AAGCAA
- - - - - - - AGCAAG
- - - - - - - GCAAGA
- - - - - - - - AAGAAG
- - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - GCTGTT