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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCTTGCAATGGATAAGAAGATTGCAATGTTTCTAGATTATGATGGCACACTTTCACCAATAGTAGATGATCCGAATTGTGCCTTTATGTCTGAATCTgtaagtaatacatactggattgtcatattatatcttatattagttaaattaagtcaattcttctttagttcatagtgtaaatactatcttccatttttatttttgttctttctcaaaacatgtttag

Basic information

species Glycine max
transcript GLYMA17G14780.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G14780.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G12430.1 (Arabidopsis thaliana), 5'ss of exon 4
TGACCTTGCAATGGATAAGAAGATTGCAATGTTTCTAGATTATGATGGCACACTTTCACCAATAGTAGATGATCCGAATTGTGCCTTTATGTCTGAATCTgtaagtaatacatactggattgtcatattatatcttatattagttaaattaagtcaattcttctttagttcatagtgtaaatactatcttccatttttatttttgttctttctcaaaacatgtttag
 |  |  |||| | | || ||||||||  | ||||||||||||||||| || ||||| |||||||| ||||||||  || ||||| | ||||||||  |    ||||||| |  |     | |  | |  || ||||   |  |             || || | | | | ||||| | | | |||       | ||| || || |  | | |||            
AGCTCAAGCAAAGAAGAAAAAGATTGCTGTATTTCTAGATTATGATGGTACTCTTTCTCCAATAGTTGATGATCCTGATCGTGCCATCATGTCTGATGC----Agtaataaacgcaaaccttttgtctattaccttactctgttc---------tgttttttgtgtggcttatagtatga-tgctaaaaagattgttttttcttttgatctttcag-----------

upper sequence: GLYMA17G14780.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G22590.1 (Arabidopsis thaliana), 5'ss of exon 4
TGACCTTGCAATGGATAAGAAGATTGCAATGTTTCTAGATTATGATGGCACACTTTCACCAATAGTAGATGATCCGAATTGTGCCTTTATGTCTGAATCTgtaagtaatacatactggattgtcatattatatcttatattagttaaattaagtcaattcttctttagttcatagtgtaaata-ctatcttccatttttatttttgttctttctcaaaacatgtttag
 |  |  |||| | | |||||||| ||  ||||||||||||||||||| |||||||| |||||||| ||||| ||  || | ||| | ||||||||  | ||||  |      |||  | | ||        | || | ||||||            | ||   | |  ||| |  ||||||  |||  ||   ||| ||| | | |  |                  
AGCTCAAGCAAAGAACAAGAAGATAGCTGTGTTTCTAGATTATGATGGAACACTTTCTCCAATAGTCGATGACCCTGATCGCGCCATCATGTCTGATGCGgtaaaga------actaaaatctc--------tgttttgttagttt-----------tgctctctgatctcaaaacgtaaatggctaagtttgttttctatatctctcttag----------------

upper sequence: GLYMA17G14780.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0154g00110.t01 (Vitis vinifera), 5'ss of exon 2
TGACCTTGCAATGGATAAGAAGATTGCAATGTTTCTAGATTATGATGGCACACTTTCACCAATAGTAGATGATCCGAATTGTGCCTTTATGTCTGAATCTgtaagtaatacatactggattgtcatattatatcttatattagttaaattaagtcaattcttctttagttcatagtgtaaatactatcttccatttttatttttgttctttctcaaaacatgtttag
      ||||      |||||||| ||||||||||| ||||||||||| || ||||| ||||| || ||||||||  |  ||||| | ||||||||  ||||||| |||   ||||   | ||  |||              ||  ||  |  ||  | ||||  |  |||  |  |||  |   || || || ||  ||     ||  || |||            
AAGTTATGCACAAAGCAAGAAGATAGCAATGTTTCTGGATTATGATGGGACTCTTTCTCCAATTGTTGATGATCCTGACCGTGCCCTGATGTCTGATGCTgtaagaaattgttactcattagtagtat--------------gtgcaaagagttctttccttccct--ttccaaccgtatgt-tgatattgcaattaaata---atttgttgtcag-----------

upper sequence: GLYMA17G14780.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0233g00030.t01 (Vitis vinifera), 5'ss of exon 2
TGACCTTGCAATGGATAAGAAGATTGCAATGTTTCTAGATTATGATGGCACACTTTCACCAATAGTAGATGATCCGAATTGTGCCTTTATGTCTGAATCTgtaagtaatacatactggattgtcatattatatcttatattagttaaattaagtcaattcttctttagttc-atagtgtaaatactatcttccatttttatttttgttctttctcaaaacatgtttag
      |||||     |||||||| ||||||||||| ||||||||||| || ||||| ||||| || ||||||||  |  ||||| | ||||||||  ||||||| |||   ||||          ||||  |  ||| |      | ||   ||  | | | |  |   | ||  ||  | | | |||    | |||  | |  |                      
AAGTTATGCAAAAAGCAAGAAGATAGCAATGTTTCTGGATTATGATGGGACTCTTTCTCCAATTGTTGATGATCCTGACCGTGCCCTGATGTCTGATGCTgtaagaaattgttact---------catta-gtagtatgtgcaaagagttctttccttccctttccaaccctatgttgatattgcaatcaaataatttgttgtcag----------------------