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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGAAGTGACTAAGATTCCTTGCCAAAGTAACGAGTTTGTGAGTGAACTTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAGgttagtgtttcctcatgcctctttttgtgtttctgtgtgcaggataactgtgtcctatttttatcactaatttatatatatattttttatgctgcttgattttcacag

Basic information

species Glycine max
transcript GLYMA17G13770.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13770.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 2
ATCTGAAGTGACTAAGATTCCTTGCCAAAGTAACGAGTTTGTGAGTGAACTTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAGgttagtgtttcctcatgcctctttt----tgtgtttctg------tgtgcaggataactgtgtcctatttttatcactaatttatatata-tattttttatgctgcttgattttcacag---
 | |||||  ||||| |||||||||||||| || ||||||||   ||| ||||| || ||||||||||| |||||||||| |||| |    ||||| |||||| |  ||   |  |   ||  |     | || |||||      |||| |  | |||    |   |   |   |  || ||| | |  | | | | ||||  |  ||  |||||   |   
CTTTGAAGATACTAAAATTCCTTGCCAAAGCAATGAGTTTGTTCTTGAGCTTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgctttatttattttttccctcaaaatatgcttctgcctttttgtgtattacaacaa--ttaaagggtaggcggtattttctttgcaatttctcttatagtatttatttttccttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298186986|gb|HO034079.1|HO034079
EST:     TTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAG                         TCTGGAGATTTAGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGC
genomic: TTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAGgttagtgttt ... attttcacagTCTGGAGATTTAGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGC
EST: gi|192330713|gb|FK022326.1|FK022326
EST:     TTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAG                         TCTGGAGATTTAGAAAAGGCACAACTTGGTCTGG
genomic: TTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAGgttagtgttt ... attttcacagTCTGGAGATTTAGAAAAGGCACAACTTGGTCTGG
EST: gi|14205835|gb|BG839513.1|BG839513
EST:     TTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAG                         TCTGGAGATTTAGAAAAGGCACAACTTGGTCTGG
genomic: TTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAGgttagtgttt ... attttcacagTCTGGAGATTTAGAAAAGGCACAACTTGGTCTGG
EST: gi|213606556|gb|DB972505.1|DB972505
EST:     TTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAG                         TCTGGAGATTTAGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGA
genomic: TTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAGgttagtgttt ... attttcacagTCTGGAGATTTAGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGA
EST: gi|209723471|gb|BW669472.1|BW669472
EST:     TTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAG                         TCTGGAGATTTAGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGA
genomic: TTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAGgttagtgttt ... attttcacagTCTGGAGATTTAGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGA
EST: gi|213599197|gb|DB962262.1|DB962262
EST:     TTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAG                         TCTGGAGATTTAGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGA
genomic: TTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAGgttagtgttt ... attttcacagTCTGGAGATTTAGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGA
EST: gi|213593750|gb|DB957870.1|DB957870
EST:     TTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAG                         TCTGGAGATTTAGAANAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGA
genomic: TTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAGgttagtgttt ... attttcacagTCTGGAGATTTAGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGA