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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCATGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTATgtaagttgttatgttagtttatattttgtgttgtgtgacttcggtgagaatggttgttgttattatctaatgttctagtgaaaaaactgtgtttggattt...

Basic information

species Glycine max
transcript GLYMA17G13470.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10847879|gb|BF070480.1|BF070480
EST:     TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTAT                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTATgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|26058596|gb|CA801510.1|CA801510
EST:     TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTAT                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTATgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|31465587|gb|CD407615.1|CD407615
EST:     GAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTAT                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: GAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTATgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|5057309|gb|AI735785.1|AI735785
EST:     TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTAT                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTATgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|6071786|gb|AW101173.1|AW101173
EST:     TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTAT                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTATgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|31562008|gb|CD487846.1|CD487846
EST:     TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTAT                         GAACTAAATGGA
genomic: TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTATgtaagttgtt ... tctgtgacagGAACTAAATGGA
EST: gi|26058595|gb|CA801509.1|CA801509
EST:     TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTAT                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTATgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|17400637|gb|BM177419.1|BM177419
EST:     TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTAT                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTATgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|120530752|gb|EH258885.1|EH258885
EST:     TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTAT                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTATgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|15203609|gb|BI426377.1|BI426377
EST:     TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTAT                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTATgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|193693517|gb|FK631643.1|FK631643
EST:     TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTAT                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTATgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|120534064|gb|EH262197.1|EH262197
EST:     TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTAT                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTATgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|31467356|gb|CD409384.1|CD409384
EST:     TGAGTACCATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTAT                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTATgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCATGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTATgtaagttgttatgttagtttatattttgtgttgtgtgacttcggtgagaatggttgttgttattatctaatgttctagtgaaaaaactgtgtttggattt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaaaaa