Sequence
atgc intronic sequence ATGC exonic sequenceCCCAATTGGTGGAGACACTATCTCAGTGACCAGTGGTGTTGTATCGCGCATTGAGATTTTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAGgttaggttgaaatgattagtcttccattgttattcttaatcatttaatgtctgtttggaagagcttatgggaagctaatagaaaagctgaagattctcat...
Basic information
species | Glycine max |
transcript | GLYMA17G09970.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os06g12780.1 (Oryza sativa), 5'ss of exon 2
CCCAATTGGTGGAGACACTATCTCAGTGACCAGTGGTGTTGTATCGCGCATTGAGATTTTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAGgttagg---ttgaaatgatta---gtcttccattgt---tattct--------taatcat----ttaatgtctgtttggaagagcttatgggaagc---taatagaaaagctga---agattctcat---------------
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CCCAATTGGAGGAGACACGATCTCAGTCACAAGTGGTGTTGTATCTAGAATAGAGATACTTTCATATGTTCATGGTTCAACGGAGCTTCTAGGATTGCAGgtttttctcttaagatctttgcatgcttttgattgtctatattttgcatattgtagacatagtttttacttctctttggaattatttctaataatctcttaacctgggagcatacttaagttttcactgtttcatggaacag
upper sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G015959_T01 (Zea mays), 5'ss of exon 2
CCCAATTGGTGGAGACACTATCTCAGTGACCAGTGGTGTTGTATCGCGCATTGAGATTTTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAGgttaggtt-------gaaatgat--tagtcttccattgttattctt----aatcatttaatgtctgtttggaagagcttatgggaag------ctaatagaaaagctgaagattctcat----------------------
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TCCAATTGGAGGAGATACCATATCCGTGACAAGTGGAGTGGTCTCTAGGATAGAAATACTTTCATATGTTCATGGTTCTACAGAACTTCTAGGATTACAGgtacattttttctctaaaattatgataacttcaaataaatctttttataaagatagatgttgcaagtgaagtaaatattttgagaaatcatgacttatcggctcaccgacgtgtctaatacgggccttgtcttgttaatag
upper sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv17s0000g07900.t01 (Vitis vinifera), 5'ss of exon 2
CCCAATTGGTGGAGACACTATCTCAGTGACCAGTGGTGTTGTATCGCGCATTGAGATTTTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAGgttaggttgaaatgattagtcttccattgttattcttaatcatttaatgtctgtttggaagagcttatgggaagctaatagaaaagctgaagattctcat
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CCCAATTGGGGGAGACACGATTTCTGTAACAAGTGGTGTTGTATCAAGAATAGAGATCCTATCTTATGTTCATGGGTCCACTGAGCTTCTGGGTTTACAGgtca---tggggtcac-atttctcctttttctcttttagttatt-gttggcttgttgatccatttttctgatgtctcctattcttgatg--gttttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17519347|gb|BM188389.1|BM188389EST: TTGAGATTTTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAG ATTGATGCTGCTATAAACTCTGGCAATTCTGGTGGACCTGCATTTAATGAC
genomic: TTGAGATTTTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAGgttaggttga ... tcttttgcagATTGATGCTGCTATAAACTCTGGCAATTCTGGTGGACCTGCATTTAATGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCCAATTGGTGGAGACACTATCTCAGTGACCAGTGGTGTTGTATCGCGCATTGAGATTTTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAGgttaggttgaaatgattagtcttccattgttattcttaatcatttaatgtctgtttggaagagcttatgggaagctaatagaaaagctgaagattctcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatagaaa