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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatacataacattatacatacacttatgtagtgtttctctaagatacaatgtcgcataatatgatatttgatgatgcattggataacagtataac...

Basic information

species Glycine max
transcript GLYMA17G09670.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151403527|gb|EV273337.1|EV273337
EST:     GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
genomic: GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
EST: gi|58021580|gb|CX708321.1|CX708321
EST:     GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
genomic: GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
EST: gi|209722515|gb|BW682613.1|BW682613
EST:     GGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
genomic: GGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
EST: gi|298175212|gb|HO018093.1|HO018093
EST:     GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
genomic: GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
EST: gi|16277293|gb|BI942305.1|BI942305
EST:     GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
genomic: GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
EST: gi|209700506|gb|BW667294.1|BW667294
EST:     TGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
genomic: TGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
EST: gi|209700505|gb|BW667293.1|BW667293
EST:     GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
genomic: GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
EST: gi|12689020|gb|BG155365.1|BG155365
EST:     GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
genomic: GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
EST: gi|209722514|gb|BW682612.1|BW682612
EST:     GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
genomic: GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
EST: gi|16279047|gb|BI943229.1|BI943229
EST:     GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
genomic: GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
EST: gi|58024536|gb|CX711277.1|CX711277
EST:     GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
genomic: GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
EST: gi|21675146|gb|BQ627506.1|BQ627506
EST:     GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
genomic: GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
EST: gi|12690106|gb|BG156442.1|BG156442
EST:     GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
genomic: GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
EST: gi|19348064|gb|BM892596.1|BM892596
EST:     GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
genomic: GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
EST: gi|16282263|gb|BI944922.1|BI944922
EST:     GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
genomic: GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
EST: gi|208267314|gb|GE065649.1|GE065649
EST:     GGTGAAGGGAAGGCAAATTGGTAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
genomic: GGTGAAGGGAAGGCAAA-TGG-AGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
EST: gi|298199150|gb|HO042513.1|HO042513
EST:     GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTACCACCAGTTAAGCTCCACTGCAGCAT
genomic: GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
EST: gi|16282005|gb|BI944785.1|BI944785
EST:     GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC                         TGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT
genomic: GAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatac ... tgtcctgcagTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACgtaagtatacataacattatacatacacttatgtagtgtttctctaagatacaatgtcgcataatatgatatttgatgatgcattggataacagtataac

- - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - GGAGGA