1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCCAAAACTAGCTGGAACAGTTAACTGGGGCACGGCAACTGTCGTTGGAGTATTTGCAGGCATGTTATATGGCGGTAGCAAGGAGGCAGCTGCTTCTGTTgtaagtttatgagtaaaaatatgcttcaaaactctgccttatatagaattgtgaaagtgtattgtgttcaacacagaaaaggtcattaaaagtaaagaca...
species | Glycine max |
transcript | GLYMA17G09580.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TATTTGCAGGCATGTTATATGGCGGTAGCAAGGAGGCAGCTGCTTCTGTT AGCAAGGATGCAGAAGTTATGTTGAAACTTGTGAGCACAGAAGACAAGCGTEST: gi|13480448|gb|BG509791.1|BG509791
genomic: TATTTGCAGGCATGTTATATGGCGGTAGCAAGGAGGCAGCTGCTTCTGTTgtaagtttat ... gtgttgctagAGCAAGGATGCAGAAGTTATGTTGAAACTTGGGAGCACAGAAGACAAGCGT
EST: GGCAGCTGCTTCTGTT AGCAAGGATGCAGAAGTTATGTTGAAACTTGGGAGCACAGAAGACAAGCGTEST: gi|27426126|gb|CA937646.1|CA937646
genomic: GGCAGCTGCTTCTGTTgtaagtttat ... gtgttgctagAGCAAGGATGCAGAAGTTATGTTGAAACTTGGGAGCACAGAAGACAAGCGT
EST: TATTTGCAGGCATGTTATATGGCGGTAGCAAGGAGGCAGCTGCTTCTGTT AGCAAGGATGCAGAAGTTATGTTGAAACTTGGGAGCACAGAAGACAAGCGT
genomic: TATTTGCAGGCATGTTATATGGCGGTAGCAAGGAGGCAGCTGCTTCTGTTgtaagtttat ... gtgttgctagAGCAAGGATGCAGAAGTTATGTTGAAACTTGGGAGCACAGAAGACAAGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAAAACTAGCTGGAACAGTTAACTGGGGCACGGCAACTGTCGTTGGAGTATTTGCAGGCATGTTATATGGCGGTAGCAAGGAGGCAGCTGCTTCTGTTgtaagtttatgagtaaaaatatgcttcaaaactctgccttatatagaattgtgaaagtgtattgtgttcaacacagaaaaggtcattaaaagtaaagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagtaa