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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATTGGCCTCAATACACTCCAATATCATCCCCTTCAGATCATGATCTCACTCTTTTCACTGTCTCAAAATCCACTGGTCATGCAGGAATGCGCATAGGgtaagttgataacaatactttttcagcctcaattgttcatgtggactactcctttttagaagttaactcaataacataaaagaggataattaaggatagc...

Basic information

species Glycine max
transcript GLYMA17G09400.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G09400.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv17s0000g08990.t01 (Vitis vinifera), 5'ss of exon 5
ATTATTGGCCTCAATACACTCCAATATCATCCCCTTCAGATCATGATCTCACTCTTTTCACTGTCTCAAAATCCACTGGTCATGCAGGAATGCGCATAGGgtaag------ttgataacaatactttttcagcctc---aattgttc-------atgtggac-tactcctttttagaagttaactcaataa-cataaaagaggataattaaggatagc------
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ACTACTGGCCACAGTACACTCCAATTTCTTCTCCTGCAGACCATGATCTCATGTTGTTCACTGTCTCAAAAGCCACTGGCCATGCTGGGATGCGCCTTGGgtaagcagttcttactaacattaccaaaacaaacatggaaatctttcttcttgtatttagatgtattacaacatgtagatcgactctctaaacattcccatccatgatcaattatgccttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404824|gb|EV274638.1|EV274638
EST:     ACTCTTTTCACTGTCTCAAAATCCACTGGTCATGCAGGAATGCGCATAGG                         GTGGGCTCTTGTCAAAGATAAAGGGGTAGCAAAGAAAATGACTAAATTCAT
genomic: ACTCTTTTCACTGTCTCAAAATCCACTGGTCATGCAGGAATGCGCATAGGgtaagttgat ... tattttctagGTGGGCTCTTGTCAAAGATAAAGGGGTAGCAAAGAAAATGACTAAATTCAT