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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTCACTGCCTTATTGTCGGCCTAAACACATTTTTGACAGTGCAGAAAATCTAGGGGAAGTTCTCCGGGGTGACCGCATTGAAAACTCTCCCTATGTGgttggtttaaatctttcagacaggttccagctttctacctttagtgtattatgtttcactactaaaatattgaaacattttgattcttccag

Basic information

species Glycine max
transcript GLYMA17G08130.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G08130.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G146951_T01 (Zea mays), 5'ss of exon 2
CTATTCACTGCCTTATTGTCGGCCTAAACACATTTTTGACAGTGCAGAAAATCTAGGGGAAGTTCTCCGGGGTGACCGCATTGAAAACTCTCCCTATGTGgttggtttaaatctttcagacaggttccagctttctacctttagtgtattatgtttcactactaaaatattgaaacattttgattcttccag
|||||| || || |  ||   |||  |   |||  ||||||||||||||||||| || |||||||| || || || |||||||||||||||||||||  |||| |||       |    |  ||||       ||    |||      ||  |    | |  |  | | ||||     | |  || || |||
CTATTCTCTCCCATTCTGCAAGCCGGATACCATAGTTGACAGTGCAGAAAATCTCGGTGAAGTTCTTCGTGGAGATCGCATTGAAAACTCTCCCTATACGgtttgttctttcactgtgcattggtttatctgatcagtgtttgacaccttgggcactagt--ttgactgttgagcatatatatttttttcag

upper sequence: GLYMA17G08130.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G458845_T01 (Zea mays), 5'ss of exon 2
CTATTCACTGCCTTATTGTCGGCCTAAACACATTTTTGACAGTGCAGAAAATCTAGGGGAAGTTCTCCGGGGTGACCGCATTGAAAACTCTCCCTATGTGgttggt-ttaaat--ctttcagacaggt-tccagctttctacctttagtgtattatgtttcactactaaaatattgaaacattttgattcttccag------------
 || || || |||| |||   ||| ||    ||  ||||||||||||| ||||| || |||||||| || ||||| |||||||| |||||||| ||||||||  ||  || ||  ||   || ||  | | || |||| ||  ||    ||| | | ||  |  ||| |  | || |   | |||| |  |||  |            
TTACTCTCTTCCTTTTTGCAAGCCAAACATGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgctagtcacatattcacctttgtaattt----gtaatgtattaaatcactgagctgtt-atctactttgttgtttctcgtttgtgctatag

upper sequence: GLYMA17G08130.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G180575_T01 (Zea mays), 5'ss of exon 2
CTATTCACTGCCTTATTGTCGGCCTAAACAC-ATTTTTGACAGTGCAGAAAATCTAGGGGAAGTTCTCCGGGGTGACCGCATTGAAAACTCTCCCTATGTGgttggt-ttaaat--ctttcagacaggt-tccagctttctacctt-tagtgtattatgt--ttcactactaaaatattgaaacattttg-attcttccag---
 || || || ||||  |||   || |||||| ||  ||||||||||||| ||||| || |||||||| || ||||| |||||||| |||||||| ||||||||  ||  || ||  ||    | ||  | | |||| || ||  || || ||||  |  |   | | |  | |   | |    | ||||   ||  |   |   
TTACTCTCTTCCTTTCTGTAAACC-AAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtcacatattcagcattgtaatttgtaatgtaccaaatcacttagtcgtcatgcactttgtcgttttacgtttgtgttgtag

upper sequence: GLYMA17G08130.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G046005_T02 (Zea mays), 5'ss of exon 2
CTATTCACTGCCTTATTGTCGGCCTAAACAC-ATTTTTGACAGTGCAGAAAATCTAGGGGAAGTTCTCCGGGGTGACCGCATTGAAAACTCTCCCTATGTGgttggt-ttaaat--ctttcagacaggt-tccagctttctacctt-tagtgtattatgt--ttcactactaaaatattgaaacattttg-attcttccag---
 || || || ||||  |||   || |||||| ||  ||||||||||||| ||||| || |||||||| || ||||| |||||||| |||||||| ||||||||  ||  || ||  ||    | ||  | | |||| || ||  || || ||||  |  |   | | |  | |   | |    | ||||   ||  |   |   
TTACTCTCTTCCTTTCTGTAAACC-AAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtcacatattcagcattgtaatttgtaatgtaccaaatcactgagtcgtcatgcactttgccgttttacgtttgtgttgtag

upper sequence: GLYMA17G08130.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0037g00210.t01 (Vitis vinifera), 5'ss of exon 2
CTATTCACTGCCTTATTGTCGGCCTAAACACATTTTTGACAGTGCAGAAAATCTAGGGGAAGTTCTCCGGGGTGACCGCATTGAAAACTCTCCCTATGTGgttggtttaaatctttcagac----aggttccagctttctacctttagtgtattatgtttcactactaaaatattgaaacattttgattcttccag
|||||| || |||||||| || ||  ||  |||  ||||||||||||| ||||| || |||||||| |||||||| || |||||||||||||| ||||||||  |||  | |  || | ||      | |||  |||| || | |   | |  | | |     |  | |  |  | | | |   || || || |||
CTATTCTCTTCCTTATTGCCGTCCAGAAACCATAGTTGACAGTGCAGAGAATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTGgtctgttagagttcttaatactttagtgatcctcctttatatcct---tttcctgtatgcagtttattagtttctaacagaagctgtttgttgcag