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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTGGCCGCCGAACAAAGCACCGAACCGCAAAAACCATCCCCCAAGAAAACCGTCGACACCTTCGGGCAACGCACCTCCATCTACCGCGGCGTGACCCGgtatcttattcatgaccaccaccttttatcatcataatataatattagtaattattttatttatctgattctgtttcttattttcag

Basic information

species Glycine max
transcript GLYMA17G07010.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07010.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G086573_T01 (Zea mays), 5'ss of exon 2
CCTTGGCCGCCGAACAAAGCACCGAAC-CGCAAAAACCATCCCCCAAGAAAACCGTCGACACCTTCGGGCAACGCACCTCCATCTACCGCGGCGTGACCCGgtatcttattcatgaccaccaccttttatcatcataatataatattagtaattattttatttatctgattctgtttcttattttcag--------------
   |||||   |      ||  ||    | |     ||    |  | |||  |||||||| |||| ||||| ||||| ||||||||||||||||| || |||||   ||  | |  |   | |   |    |||  |        | ||  ||   |  |  ||    |   ||    ||   ||  |              
AGCTGGCC-TTGCCTGCGGCGGCGGCTGCTCCGGCGCCGGAGCAGAGGAAGGCCGTCGACTCCTTTGGGCAGCGCACGTCCATCTACCGCGGCGTCACACGgtaagctaagc-tagctgtcgcagatccatatctaatccggccgtgaggtatatatgaacctaaaaaaaagtgacctttgcgtttgggtgtttcttatcat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14259750|gb|BG882658.1|BG882658
EST:     ACCGTCGACACCTTCGGGCAACGCACCTCCATCTACCGCGGCGTGACCCG                         ACATAGATGGACTGGGAGATACGAAGCTCATCTATGGGACAATAGTTGCAG
genomic: ACCGTCGACACCTTCGGGCAACGCACCTCCATCTACCGCGGCGTGACCCGgtatcttatt ... ttattttcagACATAGATGGACTGGGAGATACGAAGCTCATCTATGGGACAATAGTTGCAG
EST: gi|7685789|gb|AW756437.1|AW756437
EST:     ACCGTCGACACCTTCGGGCAACGCACCTCCATCTACCGCGGCGTGACCCG                         ACATAGATGGACTGGGAGATACGAAGCTCATCTATGGGACAATAGTTGCAG
genomic: ACCGTCGACACCTTCGGGCAACGCACCTCCATCTACCGCGGCGTGACCCGgtatcttatt ... ttattttcagACATAGATGGACTGGGAGATACGAAGCTCATCTATGGGACAATAGTTGCAG