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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGGCTGGACTAGCACCTGAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTTgtaagattttttatttttattattcggagcaatctggttttattattactgaaattgctgttcgtgttcttgttttgtgttggatatgattgcaacaggatgttattgctatctgttcaattttttaatggccttatatttttttttccctttcag

Basic information

species Glycine max
transcript GLYMA17G06110.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7691314|gb|AW759507.1|AW759507
EST:     GAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTT                         ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: gi|17400832|gb|BM177614.1|BM177614
EST:     GAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTT                         ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: gi|5606768|gb|AI900866.1|AI900866
EST:     GAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTT                         ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: gi|19348227|gb|BM892759.1|BM892759
EST:     GAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTT                         ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA