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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTACAAGGTGTCCATCGGAGCAGCTTGTGGGCTTTCATGGCCCAGTGACCGTCTCGTTATCCAAGTCCTGGACGATTCAACTGACACTGTCATTAAGgtaaataattgtcttgcttattgacattgtagtgacacatggaatcgttggcatttatggactaatacggcataatattgtttttaccgtgcttatgtatgattag

Basic information

species Glycine max
transcript GLYMA17G05350.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533896|gb|EH262029.1|EH262029
EST:     ACCGTCTCGTTATCCAAGTCCTGGACGATTCAACTGACACTGTCATTAAG                         GAAATGGTGGAGCAAGAATGTCTGAGATGGGCAAGTAAAGGCATCAACATA
genomic: ACCGTCTCGTTATCCAAGTCCTGGACGATTCAACTGACACTGTCATTAAGgtaaataatt ... gtatgattagGAAATGGTGGAGCAAGAATGTTTGAGATGGGCAAGTAAAGGCATCAACATA
EST: gi|120528906|gb|EH257040.1|EH257040
EST:     ACCGTCTCGTTATCCAAGTCCTGGACGATTCAACTGACACTGTCATTAAG                         GAAATGGTGGAGCAAGAATGTTTGAGATGGGCAAGTAAAGGCATCAACATA
genomic: ACCGTCTCGTTATCCAAGTCCTGGACGATTCAACTGACACTGTCATTAAGgtaaataatt ... gtatgattagGAAATGGTGGAGCAAGAATGTTTGAGATGGGCAAGTAAAGGCATCAACATA
EST: gi|298188262|gb|HO034955.1|HO034955
EST:     ACCGTCTCGTTATCCAAGTCCTGGACGATTCAACTGACACTGTCATTAAG                         GAAATGGTGGAGCAAGAA
genomic: ACCGTCTCGTTATCCAAGTCCTGGACGATTCAACTGACACTGTCATTAAGgtaaataatt ... gtatgattagGAAATGGTGGAGCAAGAA