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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCAAGGTGCCTTCTCATGAAGCCGTGGCACTTGGATTTCTTATGAACACAAAGGGCTTGGTAGAACTCATCGTTCTCAACATAGGGAAGGACCGTAAGgtatatataatatatccattcatcataacaaacactgattttccttggctcacacacacatgtcttttaattgttgacataatttataaaagacttgtacttcattgttatatttgattgtgaatcttcttcttgcaatgcag

Basic information

species Glycine max
transcript GLYMA17G04820.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04820.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0020g01150.t01 (Vitis vinifera), 5'ss of exon 2
CTGCAAGGTGCCTTCTCATGAAGCCGTGGCACTTGGATTTCTTATGAACACAAAGGGCTTGGTAGAACTCATCGTTCTCAACATAGGGAAGGACCGTAAGgtatatataatatatccattcatcataacaaaca-ctgattttccttggctcacacacacatgtcttttaattgttgacataatttataaaagacttgtacttcattgttatatttgattgtgaatcttcttcttgcaatgcag
 |  ||||||||       || || || | ||||||||| || |||||||| ||||||||||| || || ||||| |||||||| || |||||||| |||||| |||         || ||||  |   | | |  ||||  |  ||||       |      |       ||| |  | |  || || | | |  |                                               
ATTTAAGGTGCCGATGAGGGAGGCTGTTGTACTTGGATTCCTCATGAACACCAAGGGCTTGGTGGAGCTGATCGTCCTCAACATTGGCAAGGACCGGAAGgtacataa-----gctcactcattctggtacatagttgatgatttttggtctgggtaggtggctgaccatcttgcttccttgtttgattatatatatag---------------------------------------------