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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGAATCCCCATCGGAAGAAAATTGAATCTGATGGCACATTATGGCTATGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACGAACATTCTCTgtaagcatttcaaaccctcataaaaaaaaatatcatttccttttgcaccttcttaatttggatcctcatttttagagatcaatttttttttccag

Basic information

species Glycine max
transcript GLYMA17G04760.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22927060|gb|BU544199.1|BU544199
EST:     TGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACGAACATTCTCT                         GTCCTAACTCTCAACCACTTAATTCTGGGAATTTTCACGTGCTAACTTATG
genomic: TGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACGAACATTCTCTgtaagcattt ... ttttttccagGTCCTAACTCTCAACCACTTAATTCTGGGAATTTTCACGTGCTAACTTATG
EST: gi|298177442|gb|HO023575.1|HO023575
EST:     TGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACGAACATTCTCT                         GTCCTAACTCTCAACCACTTAATTCTGGGAATTTTCACGTGCTAACTTATG
genomic: TGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACGAACATTCTCTgtaagcattt ... ttttttccagGTCCTAACTCTCAACCACTTAATTCTGGGAATTTTCACGTGCTAACTTATG
EST: gi|192297654|gb|FG992762.1|FG992762
EST:     TGGTGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACGAACATTCTCT                         GTCCTAACTCTCAACCACTTAATTCTGGGAATTTTCACGTGCTAACTTATG
genomic: TGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACGAACATTCTCTgtaagcattt ... ttttttccagGTCCTAACTCTCAACCACTTAATTCTGGGAATTTTCACGTGCTAACTTATG
EST: gi|151397442|gb|EV267315.1|EV267315
EST:     TGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACGAACATTCTCT                         GTCCTAACTCTCAACCACTTAATTCTGGGAATTTTCACGTGCTAACTTATG
genomic: TGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACGAACATTCTCTgtaagcattt ... ttttttccagGTCCTAACTCTCAACCACTTAATTCTGGGAATTTTCACGTGCTAACTTATG
EST: gi|24136498|gb|BU927008.1|BU927008
EST:     TGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACGAACATTCTCT                         GTCCTAACTCTCAACCACTTAATTCTGGGAATTTTCACGTGCTAACTTATG
genomic: TGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACGAACATTCTCTgtaagcattt ... ttttttccagGTCCTAACTCTCAACCACTTAATTCTGGGAATTTTCACGTGCTAACTTATG
EST: gi|192297653|gb|FG992761.1|FG992761
EST:     TGGTGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACGAACATTCTCT                         GTCCTAACTCTCAACCACTTAATTCTGGGAATTTTCACGTGCTAACTTATG
genomic: TGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACGAACATTCTCTgtaagcattt ... ttttttccagGTCCTAACTCTCAACCACTTAATTCTGGGAATTTTCACGTGCTAACTTATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGGAATCCCCATCGGAAGAAAATTGAATCTGATGGCACATTATGGCTATGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACGAACATTCTCTgtaagcatttcaaaccctcataaaaaaaaatatcatttccttttgcaccttcttaatttggatcctcatttttagagatcaatttttttttccag

- - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA