Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTATAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGgtatatatatatatatatatatcatatacccatgagtatataattattaatcaatatcaaatatatgcatttcatttatcaaaccttaattcattttgtcattatgattcgttcttctcctttttagtactttggattgggactaataattaaactatttcttgcggtgcacgcaaaacag

Basic information

species Glycine max
transcript GLYMA17G03950.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03950.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0077g00730.t01 (Vitis vinifera), 5'ss of exon 2
GATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTATAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGgtatatatatatatatatatatcatatacccatgagtatataattattaatcaatatcaaatatatgcatttcatttatcaaaccttaattcattttgtcattatgattcgttcttctcctttttagtactttggattgggactaataattaaactatttcttgcggtgcacgcaaaacag
||||||||||||| || ||||| ||||| ||||| || |||||||| || |||||| | |||||||| |||||||| || || |||||||||  ||| ||||||||    | ||    || |    | ||| |    || ||||||||      |    ||| |||| |    |   |  |||     |    | | |   | |  |  | || |  |  |||| ||                                                      
GATTTGCGTTCATCACCAAGAGCGAAGTTGATCATCTTGACGATGGATACAGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAGgtatat---caaatcccgatcttg-gtccccttattcatttaattatt------ttcttaat-tatgaagcaaaaggaaaaaa-----aaaagtgtggaagtaactaaacattttcttaattttcag------------------------------------------------------

upper sequence: GLYMA17G03950.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S25_173V6.1 (Physcomitrella patens), 5'ss of exon 4
GATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTATAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGgtatatatatatatatatatatcatatacccatgagtatataattattaatcaatatcaaatatatgcatttcatttatcaaaccttaattcattttgtcattatgattcgttcttctcctttttagtactttggattgggactaataattaaactatttcttgcggtgcacgcaaaacag
 || |||  |    ||    |  || || |||    | |||||||||| ||  |||||||||||||| || ||||| ||||||||||||||| |||| ||||| ||  || |  |||    || |||   |||||   ||  ||    |||  ||  |  || |  | |    |   ||  ||      |  |||| |                                                                                   
TATATGCCATTGAAACTCGCACGGATGTTGATATAATGGACGATGGCTTTAAGTGGCGCAAGTACGGCCAGAAAGCTGTCAAAAACAGCCCTTATCCCAGgtacat-catgtcgatacccttcttat---catgacagtaagatcg--aat--atgcctcatgtcgggacgggacagattgaaatcatttggatttggatgcggcag--------------------------------------------------------------------------

upper sequence: GLYMA17G03950.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S159_105V6.1 (Physcomitrella patens), 5'ss of exon 2
GATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTATAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGgtatatatatatat-atatatatcatatacccatgagtatataattattaatcaatatcaaatatatgcatttcatttatcaaaccttaattcattttgtcattatgattcgttcttctcctttttagtactttggattgggactaataattaaactatttcttgcggtgcacgcaaaacag
|||||||  |||  ||    |  || |||||   | | |||||||| | || ||||||||| || || || ||||||||||| ||||||||||||||||||| | | |    |  |      |  |||  ||||         ||  | ||      | |   | | | || | ||| |        | |   || | |                                                                                   
GATTTGCCATCAAAACGCGAACCGACGTGGACATCATGGACGATGGTTTTAAATGGCGCAAATATGGCCAGAAAGCCGTCAAGAACAGCCCTCATCCAAGgtttgtctggtcaccacgcgcgtt-tatcaccatattccccccatcttcaagtctagttagcaacaagtatctgattaaaatcgttctgagatatgt-gcag--------------------------------------------------------------------------------

upper sequence: GLYMA17G03950.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S198_83V6.1 (Physcomitrella patens), 5'ss of exon 2
GATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTATAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGgtatatatatatatatatatatcatatacccatgagtatataattattaatcaatatcaaatatatgcatttcatttatcaaaccttaattcattttgtcattatgattcgttcttctcctttttagtactttggattgggactaataattaaactatttcttgcggtgcacgcaaaacag
||| |||  |||  || |  | |||  |||||  |||||| ||||| |  |  ||||||||||| || || |||||||| || |||||||||||||| |||||    |  |||  | | |    |||  |    |||  |  | | ||||    ||         |    | || | |||||    ||    ||  |   |  |  ||     |                                                                   
GATATGCTATCAAAACCAGAACTGATATGGATGTCCTCGATGATGGTTTCAAGTGGCGCAAGTATGGGCAGAAAGCCGTGAAGAACAGCCCTCATCCTAGgtaagctttaataccttttt----tatgacttgaagttca--acttttaacttgta--------gtattctgcagtaatcaactgctagcctatcgtagtacgacaatataagc-------------------------------------------------------------------