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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTCAAGGTATATCGTCTGAATGATGATGGGAAATGGGATGACCAGGGTACTGGACATGTCTCTGTTGATTATTTAGAGgtttgaaaatcttttttatttgatgaagcttttatttgtgacacgacagcttgggtaatggtatcatttactctgtgtagcttcttacacctggtggaaa...

Basic information

species Glycine max
transcript GLYMA17G03570.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03570.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 2
CCTGTCAAGGTATATCGTCTGAATGATGATGGGAAATGGGATGACCAGGGTACTGGACATGTCTCTGTTGATTATTTAGAGgtttgaaaatcttttttat-ttgatgaagctt-----ttatttg--tgacacgacagcttgggtaatggtatcatttactctgtgtagcttcttacacctggtggaaa----------------------------------------
| ||| ||||| || ||||||||||| ||||||||||||||||||||||| |||||||| |||  |||||||||  | ||||||||    |   ||| || |||||   ||||     ||||||   |||||  |    |   || |   | | |  |    ||         |    | ||||  |||                                        
CGTGTTAAGGTCTACCGTCTGAATGACGATGGGAAATGGGATGACCAGGGAACTGGACACGTCAGTGTTGATTACATGGAGgtttgtctgtaactttgatcttgatctggcttaatgtttattttgctgacataaattttcaagttactctgtaacatgtggtgaactatcaatagtgcttggttaaaagttgacttgcatagtgattgttgcaaatgttgtaacacag

upper sequence: GLYMA17G03570.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S35_40V6.1 (Physcomitrella patens), 5'ss of exon 2
CCTGTCAAGGTATATCGTCTGAATGATGATGGGAAATGGGATGACCAGGGTACTGGACATGTCTCTGTTGATTATTTAGAGgtttgaaaatctt---ttttatttgatgaagcttttatttgtgacacgacagcttgggtaatggtatcatttactctgtgtagcttcttacacctggtggaaa
|  |  ||||| || ||||| |||||||| || |||||||| ||| | || || || ||||| |||||||| ||||||||||| |      |||    ||||||      |   || |  | |||  |  ||  |   | | |  ||            | ||  |||    |   | |     
CGAGGGAAGGTTTACCGTCTCAATGATGAAGGTAAATGGGACGACAAAGGAACAGGTCATGTGTCTGTTGAGTATTTAGAGgtatttcctccttaacctttattccgcagattattcaagt-tgaacctgcatttattgaagtaatagacgaagtatgatttaatttcaggaaatcgttttg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213602560|gb|DB968870.1|DB968870
EST:     GGAAATGGGATGACCAGGGTACTGGACATGTCTCTGTTGATTATTTAGAG                         CGATCAGAAGAGCTGGGCTTATTTGTTTATGATGAAGAGGATAATGAGAAC
genomic: GGAAATGGGATGACCAGGGTACTGGACATGTCTCTGTTGATTATTTAGAGgtttgaaaat ... tatgatgcagCGATCAGAAGAGCTGGGCTTATTTGTTTATGATGAAGAGGATAATGAGAAC
EST: gi|213607105|gb|DB965075.1|DB965075
EST:     GGAAATGGGATGACCAGGGTACTGGACATGTCTCTGTTGATTATTTAGAG                         CGATCAGAAGAGCTGGGCTTATTTGTTTATGATGAAGAGGATAATGAGAAC
genomic: GGAAATGGGATGACCAGGGTACTGGACATGTCTCTGTTGATTATTTAGAGgtttgaaaat ... tatgatgcagCGATCAGAAGAGCTGGGCTTATTTGTTTATGATGAAGAGGATAATGAGAAC
EST: gi|213614935|gb|DB957015.1|DB957015
EST:     GGAAATGGGATGACCAGGGTACTGGACATGTCTCTGTTGATTATTTAGAG                         CGATCAGAAGAGCTGGGCTTATTTGTTTATGATGAAGAGGATAATGAGAAC
genomic: GGAAATGGGATGACCAGGGTACTGGACATGTCTCTGTTGATTATTTAGAGgtttgaaaat ... tatgatgcagCGATCAGAAGAGCTGGGCTTATTTGTTTATGATGAAGAGGATAATGAGAAC