Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATATTGTTTACTACTGGAGGAAAAAGCTCTCATATACTTGTCTTCAGTGAAGATCTTTTCTTCATTTATCTTCTTCCACCCATCATCTTCAATGCCGGgttagttcactactcttgcttcttttttattatttttcttatttagctttcatttacatgctaaactgcataatataagttgcattatgatttgttggaa...

Basic information

species Glycine max
transcript GLYMA17G02560.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 5'ss of exon 3
TTATATTGTTTACTACTGGAGGAAAAAGCTCTCATATACTTGTCTTCAGTGAAGATCTTTTCTTCATTTATCTTCTTCCACCCATCATCTTCAATGCCGGgttagttcactac--tcttgcttcttttttattatttttcttatttagct----ttcatttacatgctaaactgcataatataagttg-cattatgatttgttggaa
| ||  || |    | ||| || || | ||| || || ||||| |||||||| || || |||||||||||| | |||||||| |||||||| ||||| |||| || |  ||     | |    || || || |    | |  |   |       || ||||   || |   ||| | || | |||  |      ||  ||       
TGATTCTGCTCGTCAGTGGTGGGAAGAACTCGCACATTCTTGTGTTCAGTGAGGACCTCTTCTTCATTTATTTGCTTCCACCGATCATCTTTAATGCTGGgtgagctttctgtgtacctatagctcttctagtgagctcccaaccaaagcggaatttattttgttgttcttctgtacaagaaaagaaggtgccttgtctt-------

upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 2
TTATATTGTTTACTACTGGAGGAAAAAGCTCTCATATACTTGTCTTCAGTGAAGATCTTTTCTTCATTTATCTTCTTCCACCCATCATCTTCAATGCCGGgttagttcactactcttgcttcttttttattatttttcttatttagctttcatttacatgctaa-actgcataatataagttgcattatgatttgttggaa
| || ||| | |  ||   ||| || ||||| ||  || | ||||||||||| ||||| |||||||| || || || || || |||||||||||||| |||| |||  |      | |     || ||  | |  ||    ||  ||||   ||    || |   ||    |  | ||    |  ||        ||||  
TGATCTTGCTGATGACCAAAGGGAAGAGCTCGCACTTATTCGTCTTCAGTGAGGATCTCTTCTTCATCTACCTCCTCCCTCCGATCATCTTCAATGCAGGgtaagtagaaacgcttcggcgtgttcttgctgtggttagatttcggcttcagttcttttgttggcacatggtggtgtacaaggtttttctggggattggg-

upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G027851_T01 (Zea mays), 5'ss of exon 2
TTATATTGTTTACTACTGGAGGAAAAAGCTCTCATATACTTGTCTTCAGTGAAGATCTTTTCTTCATTTATCTTCTTCCACCCATCATCTTCAATGCCGGgttagttcacta----ctcttgcttcttttttattatttttcttatttagctttcatttacatgctaaactgcataatataagttgcattatgatttgttggaa
| ||  || | || ||    || || ||||| || || || |||||||| || || || |||||||| || || || || |||||||||||||||||||||| ||   |       |  ||||||| |      |  ||||  | |   | ||||  || ||| || |   ||  |   |   | | |   |    | |||   
TGATCCTGCTGACCACCAAGGGGAAGAGCTCGCACATCCTCGTCTTCAGCGAGGACCTCTTCTTCATCTACCTCCTACCTCCCATCATCTTCAATGCCGGgtaagccaaacggcgtccgttgcttcctcgcacatgcttttgctttgctgatttcggtttcat-ctgagtggcgcaggctggttggtaggtttcgatcttg---

upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 3
TTATATTGTTTACTACTGGAGGAAAAAGCTCTCATATACTTGTCTTCAGTGAAGATCTTTTCTTCATTTATCTTCTTCCACCCATCATCTTCAATGCCGGgttagttcactactcttgcttcttttttattatttttcttatttagctttcatttacatgctaaactgcataatataagttgc-attatgatttgttggaa
| || ||| |||  | |||||| ||||||||    || ||||| || ||||||||||| ||||| ||||||||||||||||| || || ||||| || |||| |||||              |||| |||    |||| |    |      ||| | |  |  || ||  ||| | |  ||    |||             
TGATCTTGCTTATAAGTGGAGGCAAAAGCTCAAGGATTCTTGTGTTTAGTGAAGATCTCTTCTTTATTTATCTTCTTCCACCAATTATATTCAACGCAGGgtaagttc-------------tttttatatagaatttcatgaaaa------attgaaagtcggaattgagtaacacatttttttgttacag----------

upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0020g01960.t01 (Vitis vinifera), 5'ss of exon 3
TTATATTGTTTACTACTGGAGGAAAAAGCTCTCATATACTTGTCTTCAGTGAAGATCTTTTCTTCATTTATCTTCTTCCACCCATCATCTTCAATGCCGGgttagttcactactct--tgc---ttcttttttattatttttcttatttagctttcatttacatgctaaactgcataatataagttgcattatgatttgttggaa
||||  |  | || ||  ||||||||||||| |||||  | || |||||||||||||||||||| ||||||||||||||||| ||||| || ||||| |||| ||||   |    |  |||    ||  ||| | ||||||  |  |     | ||||  |     | |  |   ||     ||  |    ||| ||  |     
TTATTCTACTAACCACCCGAGGAAAAAGCTCACATATTTTAGTATTCAGTGAAGATCTTTTCTTTATTTATCTTCTTCCACCTATCATTTTTAATGCTGGgtaagttggatttcttaatgcaaactcgatttgaatattttgttcgtc--attatcatcaatggattcatttatttatccagagcagttagatgcttattct---

upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S169_48V6.1 (Physcomitrella patens), 5'ss of exon 2
TTATATTGTTTACTACTGGAGGAAAAAGCTCTCATATACTTGTCTTCAGTGAAGATCTTTTCTTCATTTATCTTCTTCCACCCATCATCTTCAATGCCGGgttagttcactactcttgcttcttttttattatttttcttatttagctttcatttacatgct--aaactgcataatataagttgcattatgatttgttggaa
|  | ||| || | |    |||  || | |||||||| || |  ||   |||||| ||||||||||| || ||||||||||| || ||||||||||| ||||  ||| ||        |||    | ||||  |      | | |  |           |||  | | |   || |||        || ||  ||| ||   
TAGTGTTGATTTCAAGCAAAGGTCAAGGTTCTCATATTCTGGAGTTTGATGAAGAGCTTTTCTTCATATACCTTCTTCCACCTATAATCTTCAATGCTGGgtatgttaacgttatccacttgacatctattgctgaagaaactgaagtagagcaggatagcttcagattctctattattgtcgatcttgtg--ttggtgacc

upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S113_117V6.1 (Physcomitrella patens), 5'ss of exon 1
TTATATTGTTTACTACTGGAGGAAAAAGCTCTCATATACTTGTCTTCAGTGAAGATCTTTTCTTCATTTATCTTCTTCCACCCATCATCTTCAATGCCGGgttagttcactactcttgcttcttttttattatttttcttatttagctttcatttacatgcta-aactgcataatataagttgcattatgatttgttggaa
|| | ||  || | | |   ||  | || |||||| | ||    |||  ||| || || |||||||| ||||||||||| || ||||| |||||||||||||  |||  |     |  |      ||  || ||   | | |  ||| | || |        | |||| |||  | ||   |  ||  ||  |||  |   
TTGTTTTAATTTCAAGTAATGGTCAGAGTTCTCATGTTCTGAAGTTCGATGAGGAGCTCTTCTTCATATATCTTCTTCCCCCTATCATTTTCAATGCCGGgtacgttagcattaatcacactgacttgctttttgcccctttagagcctacaatagagcataataacttcatcttctattgttgatcttgtattgaagac-