1 5' 3' | 2 5' 3' | 3 5' 3' |
AATCTGAAATCAATGATTTGGACTGGGAAAGCACTTTCTTTTTGCGCCATCTTCCTGTCTCTAACATCTCAGAGATCCCTGATCTTGATGAAGATTACAGgtcttgctccacatacaccaatatatatatatatatatatatagatagatatagatataaaacctctatttctacttgttttagttttgtgtttcattcagaggtcattttgttttcag
species | Glycine max |
transcript | GLYMA17G01330.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTCCTGTCTCTAACATCTCAGAGATCCCTGATCTTGATGAAGATTACAG GAAGGTAATGAAGGATTTTGCCGTGGAACTGGAGAAACTGGCGGAGCTAGTEST: gi|15813424|gb|BI785699.1|BI785699
genomic: CTTCCTGTCTCTAACATCTCAGAGATCCCTGATCTTGATGAAGATTACAGgtcttgctcc ... ttgttttcagGAAGGTAATGAAGGATTTTGCCGTGGAACTGGAGAAACTGGCGGAGCTAGT
EST: CTTCCTGTCTCTAACATCTCAGAGATCCCTGATCTTGATGAAGATTACAG GAAGGTAATGAAGGATTTTGCCGTGGAACTGGAGAAACTGGCGGAGCTAGTEST: gi|9564253|gb|BE473762.1|BE473762
genomic: CTTCCTGTCTCTAACATCTCAGAGATCCCTGATCTTGATGAAGATTACAGgtcttgctcc ... ttgttttcagGAAGGTAATGAAGGATTTTGCCGTGGAACTGGAGAAACTGGCGGAGCTAGT
EST: CTTCCTGTCTCTAACATCTCAGAGATCCCTGATCTTGATGAAGATTACAG GAAGGTAATGAAGGATTTTGCCGTGGAACTGGAGAAACTGGCGGAGCTAGTEST: gi|19053291|gb|BM731958.1|BM731958
genomic: CTTCCTGTCTCTAACATCTCAGAGATCCCTGATCTTGATGAAGATTACAGgtcttgctcc ... ttgttttcagGAAGGTAATGAAGGATTTTGCCGTGGAACTGGAGAAACTGGCGGAGCTAGT
EST: CTTCCTGTCTCTAACATCTCAGAGATCCCTGATCTTGATGAAGATTACAG GAAGGTAATGAAGGATTTTGCCGTGGAACTGGAGAAACTGGCGGAGCTAGT
genomic: CTTCCTGTCTCTAACATCTCAGAGATCCCTGATCTTGATGAAGATTACAGgtcttgctcc ... ttgttttcagGAAGGTAATGAAGGATTTTGCCGTGGAACTGGAGAAACTGGCGGAGCTAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCTGAAATCAATGATTTGGACTGGGAAAGCACTTTCTTTTTGCGCCATCTTCCTGTCTCTAACATCTCAGAGATCCCTGATCTTGATGAAGATTACAGgtcttgctccacatacaccaatatatatatatatatatatatagatagatatagatataaaacctctatttctacttgttttagttttgtgtttcattcagaggtcattttgttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA