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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTATCCCTATGAAGAAATTTTAAGCACATTTCACAATCAGACCGGCATAGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaaaattaaaaattaaaaatttccctatttccgattcttgttcgttatttcttataggattaagtcaacaactattaacgaacgttgtattctgcaccag

Basic information

species Glycine max
transcript GLYMA17G00710.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00710.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G49720.1 (Arabidopsis thaliana), 5'ss of exon 4
GGTTATCCCTATGAAGAAATTTTAAGCACATTTCACAATCAGACCGGCATAGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaaaattaaaaattaaaaatttccctatttccgattcttgttcgttatttcttataggattaagtcaacaactattaacgaacgttgtattctgcaccag
|| ||||| |||||||||||| |||| || || |||||||||||| |||||||||||||||| ||| | || || |||| ||  ||||| ||||| |  ||| |   |  ||  |  || ||  | | ||| |     |         ||      |  |    ||   |||   |     || |||   | |  | ||  |   
GGATATCCATATGAAGAAATTCTAAGGACCTTCCACAATCAGACCAGCATAGTCATGTGCTCATACTTGCCTATTTTCAACAAATTTAACAGAACCAATGgttagttaccttccagctttaatgtctgcctctaataaaactccaactgtggggcttgttcttgtt---tcagatatctaaaatgaaatctttggtatgtgcag-

upper sequence: GLYMA17G00710.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0035g02180.t01 (Vitis vinifera), 5'ss of exon 4
GGTTATCCCTATGAAGAAATTTTAAGCACATTTCACAATCAGACCGGCATAGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaaaattaaaaattaaaaatttccctatttccgattcttgttcgttatttcttataggattaagtcaacaactattaacg-aacgttgtattctgcaccag---
|| ||||| |||||||||||| | || |||||||||||||| ||| ||||| | |||||||| ||||| || || ||||| |||||||| |||||||  ||||  | |  | | |  |    ||  |  |  |||  | |     |  |||         | | ||||  ||| |||  |||| | || ||| |      | |  |   
GGGTATCCATATGAAGAAATTCTGAGGACATTTCACAATCAAACCAGCATAATTATGTGCTCATACCTACCGATTTTCACAAGCTTTAACAGAACAAAAGgtaccccagctaatatttcgtcaaccttacagttt--ggtggggatgggttgcc-----caagtttaacacaaaaac--ttaatgtaatgttttgggtaccccttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192293937|gb|FG986146.1|FG986146
EST:     AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGG                         GTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTG
genomic: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaaaa ... tctgcaccagGTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTG
EST: gi|8825948|gb|BE209678.1|BE209678
EST:     AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGG                         GTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTAG
genomic: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaaaa ... tctgcaccagGTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTG
EST: gi|192317016|gb|FK010919.1|FK010919
EST:     AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGG                         GTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTG
genomic: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaaaa ... tctgcaccagGTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTG
EST: gi|298195451|gb|HO039282.1|HO039282
EST:     AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGG                         GTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTG
genomic: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaaaa ... tctgcaccagGTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTG
EST: gi|26047244|gb|CA784103.1|CA784103
EST:     AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGG                         GTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTG
genomic: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaaaa ... tctgcaccagGTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTG