Sequence
atgc intronic sequence ATGC exonic sequenceCCTAGTTTTCTATTCTGGGAAAGCTCCTAAAGGCATACGAACCAGTTGGATTATGAACGAGTATCGCTTGCCGCAACATGAAACTGAACGATATCAAAAGgtactagctagtaccacataccacataccacataccacatatgtatgtgctttatatttaattaagcttcttctccttcttctttcttccatgataaatc...
Basic information
species | Glycine max |
transcript | GLYMA17G00650.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G00650.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G02450.1 (Arabidopsis thaliana), 5'ss of exon 2
CCTAGTTTTCTATTCTGGGAAAGCTCCTAAAGGCATACGAACCAGTTGGATTATGAACGAGTATCGCTTGCCGCAACATGAAACTGAACGATATCAAAAGgtactag--ctagtaccacataccacataccacataccacatatgtatgtgctttatatttaattaagcttcttctccttcttctttcttccatgataaatc-----
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CCTAGTTTTCTACTCTGGTAAAGCCCCTAAAGGCACTCGTACTAGTTGGATCATGAACGAGTATCGTCTTCCGCACCATGAAACCGAGAAGTACCAAAAGgtataaattctactataactctatatatatcctat-tcatacatacata-gatataaccctagctaggtggtgaggcctttaaaatt-----gaaattaatccctag
upper sequence: GLYMA17G00650.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0035g02020.t01 (Vitis vinifera), 5'ss of exon 3
CCTAGTTTTCTATTCTGGGAAAGCTCCTAAAGGCATACGAACCAGTTGGATTATGAACGAGTATCGCTTGCCGCAACATGAAACTGAACGATATCAAAAGgta--ctagctagtacca--cataccacataccacataccacatatgtatgtgctttatatttaattaagcttcttctccttcttctttcttccatgataaatc
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TCTTGTTTTCTACTCTGGGAAGGCTCCTAAAGGCATCCGAACAAGCTGGATCATGAACGAGTACCGCTTGCCCCAACAGGAAACCGAGCGCAGCCAAAAGgtaaattatatcaggctaatcatatctttataagggtttctcccccacctgcagatgatgatgatcaggacagtagcagtactgtacatcatctttgatt----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16105902|gb|BI893633.1|BI893633EST: TTATGAACGAGTATCGCTTGCCGCAACATGAAACTGAACGATATCAAAAG GCTGAGATATCGCTTTGCCGTGTGTAC
genomic: TTATGAACGAGTATCGCTTGCCGCAACATGAAACTGAACGATATCAAAAGgtactagcta ... acatttgcagGCTGAGATATCGCTTTGCCGTGTGTAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTAGTTTTCTATTCTGGGAAAGCTCCTAAAGGCATACGAACCAGTTGGATTATGAACGAGTATCGCTTGCCGCAACATGAAACTGAACGATATCAAAAGgtactagctagtaccacataccacataccacataccacatatgtatgtgctttatatttaattaagcttcttctccttcttctttcttccatgataaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttc