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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTGAAAAGTTTTACCAGCAGTGCGATCCTGgtgggttttctcaataataataataattcctttcttcattctgctttcaatcatttatcacgtgctttgtcactcactcctgtaattactctgctcccaa...

Basic information

species Glycine max
transcript GLYMA17G00630.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00630.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0035g01980.t01 (Vitis vinifera), 5'ss of exon 2
ATGTTGAAAAGTTTTACCAGCAGTGCGATCCTGgtgggtt---ttctcaataataataataattcctttcttcattctgctttcaatc--atttatcacgtgctttgtcactcactcctgtaattactctgctcccaa
| ||||||||||| |||||||||||||||||||||  |||   || ||       |   | |||    | || ||| || |||  ||   | || | |     ||| |   | |    ||   || |  |  | | | 
AAGTTGAAAAGTTCTACCAGCAGTGCGATCCTGgtaagttattttttctgcttccagggttattttgattttgattttgatttttatgggacttgttatagtttttttagttta----tgggttttccttattgcga-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17998805|gb|BI273657.1|BI273657
EST:     ATGTTGAAAAGTTTTACCAGCAGTGCGATCCTG                         AGAAGGAGAATTTGTGTCTATATGGGTTTCCAAATGAAACATGGGAAGTGA
genomic: ATGTTGAAAAGTTTTACCAGCAGTGCGATCCTGgtgggttttc ... ctcgttgtagAGAAGGAGAATTTGTGTCTATATGGGTTTCCAAATGAAACATGGGAAGTGA