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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCGAGTATGCTGGCGTCCAAGTTGATTTTGCCCCTAATTTTGAGATGGGTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtttatcctcatatctataatggtaatctgagtttggttttatcttatatttgcattattattctcccag

Basic information

species Glycine max
transcript GLYMA17G00470.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320830|gb|GR827279.1|GR827279
EST:     GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG                         GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: gi|209713269|gb|BW684356.1|BW684356
EST:     GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG                         GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: gi|213589446|gb|DB973182.1|DB973182
EST:     GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG                         GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: gi|213599134|gb|DB962227.1|DB962227
EST:     GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG                         GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: gi|192329687|gb|FK023275.1|FK023275
EST:     GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG                         GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: gi|298185664|gb|HO030877.1|HO030877
EST:     GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG                         GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGGGAGCAATGCCATT
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: gi|5126554|gb|AI748290.1|AI748290
EST:     GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG                         GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: gi|12773474|gb|BG238401.1|BG238401
EST:     GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG                         GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: gi|192301560|gb|FG994772.1|FG994772
EST:     GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG                         GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: gi|9899280|gb|BE608248.1|BE608248
EST:     GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG                         GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCGAGTATGCTGGCGTCCAAGTTGATTTTGCCCCTAATTTTGAGATGGGTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtttatcctcatatctataatggtaatctgagtttggttttatcttatatttgcattattattctcccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA