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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTACAAAAAATGGCAACTGCACCTGCACAAATTCCTACAAGCTTTGGCCATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGgtcttagtaccctactaccctttatttttcatcattgttttttgtttacaatttctgtttttgtttcacag

Basic information

species Glycine max
transcript GLYMA17G00250.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00250.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G08565.1 (Arabidopsis thaliana), 5'ss of exon 1
CTTACAAAAAATGGCAACTGCACCTGCACAAATTCCTACAAGCTTTGGCCATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGgtcttagtaccctactaccctttatttttcatcattgtttt-ttgtttacaatttctgttt----ttgtttcacag----
   |   | ||||| |   || ||||| || ||||| || || || ||||| ||| | |||||||||||||| |||||||| ||||| ||||| ||||||||||   | | ||  |  | | |  ||| | |  || || | |||   | | ||| ||  |    | ||||| |      
ACAAATCACAATGGGAGAAGCGCCTGCCCAGATTCCGACGAGTTTCGGCCACGAGCTTAGGGCTTGTCTTCGATGCCGCCTCGTCAAGACCTACGATCAGgtctggattctcttgtcacttgtgatttgcgtgtttcttctcttgcgaatattttttgcctaatctggtttctccaacag

upper sequence: GLYMA17G00250.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G63670.1 (Arabidopsis thaliana), 5'ss of exon 1
CTTACAAAAAATGGCAACTGCACCTGCACAAATTCCTACAAGCTTTGGCCATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGgtcttagtaccctactaccctttatttttcatcattgttttttgtttacaatttctgtttttgtttcacag----------------------------------
   |   | ||||| ||  ||||| || || ||||| || ||||| ||||||||| | |||||||||||||||||||| || ||||| |||||||| ||||| ||  |   || || |  |   | |||| || || ||||  | ||    | | || |||   ||   |                                   
ACAAACGATAATGGGAAGCGCACCAGCTCAGATTCCGACTAGCTTCGGCCATGAGCTTAGGGCTTGTCTTCGTTGCCGACTCGTCAAGACCTATGACCAGgtttttctttact-cttctttcactgtttcttccttcttttagggttttggtgtttgatttgcctttctataagctgggtttttttttttttttggttcaaacag

upper sequence: GLYMA17G00250.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ10606 (Selaginella moellendorffii), 5'ss of exon 1
CTTACAAAAAATGGCAACTGCAC-CTGCACAAATTCCTACAAGCTTTGGCCATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGgtcttagtaccctactaccctttatttttcatcattgttttttgtttacaatttctgtttttgtttcacag
       |  | | || |  ||| | || ||  | ||  | ||||| |||   ||  |  | ||||||||||| |||||||||||||||||||| ||||||||    |  | |    || |  |  || | |      |   ||| ||   ||| | | || |   || |||
--ATGGGAGGAGGACACCATCACGCCGCCCAGGTCCCCGCGAGCTTGGGCAGGGATCTACGCGCTTGTCTTCGATGCCGCCTTGTCAAAACCTACGATCAGgt----gagctc----acgccgtggttcttagagcgatcgattgattttcattcccgattct---tcgcag

upper sequence: GLYMA17G00250.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ35348 (Selaginella moellendorffii), 5'ss of exon 1
CTTACAAAAAATGGCAACTGCAC-CTGCACAAATTCCTACAAGCTTTGGCCATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGgtcttagtaccctactaccctttatttttcatcattgttttttgtttacaatttctgtttttgtttcacag
       |  | | || |  ||| | || ||  | ||  | ||||| ||    ||  |  | ||||||||||| |||||||||||||||||||| ||||||||      | |  ||   || |  ||| | |      |   ||| || | ||| | | || |   || |||
--ATGGGAGGAGGACACCATCACGCCGCCCAGGTCCCCGCGAGCTTGGGGAGGGATCTACGCGCTTGTCTTCGATGCCGCCTTGTCAAAACCTACGATCAGgtg-----agctcac--gccgtggtttcttagagcgatcggttgatttccattcccgattct---tcgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4396313|gb|AI495310.1|AI495310
EST:     ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATG---A-                         -TCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
genomic: ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGgtcttagtac ... tgtttcacagTTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
EST: gi|151409763|gb|EV279571.1|EV279571
EST:     ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAG                         TTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
genomic: ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGgtcttagtac ... tgtttcacagTTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
EST: gi|298194297|gb|HO040945.1|HO040945
EST:     ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAG                         TTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGGT
genomic: ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGgtcttagtac ... tgtttcacagTTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
EST: gi|254326666|gb|GR832818.1|GR832818
EST:     ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAG                         TTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
genomic: ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGgtcttagtac ... tgtttcacagTTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
EST: gi|298184274|gb|HO029487.1|HO029487
EST:     ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAG                         TTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
genomic: ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGgtcttagtac ... tgtttcacagTTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
EST: gi|298166707|gb|HO010146.1|HO010146
EST:     ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAG                         TTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
genomic: ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGgtcttagtac ... tgtttcacagTTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
EST: gi|192300665|gb|FG991077.1|FG991077
EST:     ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAG                         TTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
genomic: ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGgtcttagtac ... tgtttcacagTTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
EST: gi|192326423|gb|FK015925.1|FK015925
EST:     ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAG                         TTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
genomic: ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGgtcttagtac ... tgtttcacagTTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
EST: gi|298178229|gb|HO023964.1|HO023964
EST:     ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAG                         TTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
genomic: ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGgtcttagtac ... tgtttcacagTTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
EST: gi|7795909|gb|AW781306.1|AW781306
EST:     ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAG                         TTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
genomic: ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGgtcttagtac ... tgtttcacagTTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
EST: gi|15286015|gb|BI469906.1|BI469906
EST:     ATGAGTTGAGGGCTTGTCTTCGTTGTCGCCTTGTCAAAACCTATGATCAG                         TTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT
genomic: ATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGgtcttagtac ... tgtttcacagTTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGAT