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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacatttggatacttcaaattatattttcttatagttattctcatcagaacttgaaagcccaagtctttcctgctaaacgttatcttaaacagat...

Basic information

species Glycine max
transcript GLYMA16G34660.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298165084|gb|HO011133.1|HO011133
EST:     TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG                         GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: gi|192302694|gb|FG993714.1|FG993714
EST:     TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG                         GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: gi|22524321|gb|BU083132.1|BU083132
EST:     TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG                         GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: gi|21676111|gb|BQ628462.1|BQ628462
EST:     GAAACTATTAGATGGGGAATTGTTTGCGCAAG                         GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
genomic: GAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: gi|6072588|gb|AW101975.1|AW101975
EST:     TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG                         GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: gi|20813952|gb|BQ298430.1|BQ298430
EST:     CAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG                         GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
genomic: CAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: gi|22524199|gb|BU083010.1|BU083010
EST:     TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG                         GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: gi|22524381|gb|BU083192.1|BU083192
EST:     TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG                         GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: gi|23732021|gb|BU764165.1|BU764165
EST:     TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG                         GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: gi|151400455|gb|EV270269.1|EV270269
EST:     TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG                         GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGTAT
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: gi|192302695|gb|FG993715.1|FG993715
EST:     TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG                         GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: gi|15337017|gb|BI497673.1|BI497673
EST:     GGGGAATTGTTTGCGCAAG                         GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
genomic: GGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: gi|151400687|gb|EV270501.1|EV270501
EST:     TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG                         GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT