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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAACAAGCTCTAGTTTCTGCTGCCTCTGTATATGGATATACTCTATTTGAGCGAACATCTGGAAACATTGTTATTGATGTCAATGGTGAGAAACTCAGgtaaatagtattatacttttgtcattgggctttagtatcgaatgaaattgaattatatttacattgcatatcctaatgcagccttttatgttttgtgtggcttatatatatctagattttagactattcagtaacttaatcatttatgtatgcattatag

Basic information

species Glycine max
transcript GLYMA16G34610.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G34610.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 2
ATGAACAAGCTCTAGTTTCTGCTGCCTCTGTATATGGATATACTCTATTTGAGCGAACATCTGGAAACATTGTTATTGATGTCAATGGTGAGAAACTCAGgta-aatagtattatacttt-tgtcattgggctttagtatcgaatgaaattgaattatatttacattgcata--tcctaatgcagccttttatgttttg----tgtggcttatata--------tatctagattttagac---tattcagtaa-------cttaatcatttatgtatgcattatag
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ATGAGCAAGCGCTAGTTGCTGCAGCTTCTGCTTATGGATATACTCTTTTTGAGCGCACATCTGGCCATATTGTGATTGATGTCAATGGCGAGAAACTAAGgtagaataacctcttacttaatactgtgcatttttggtacattctccaactatccttgttttttataacttggttgctgctctagaattgaatatttggataataaaaataatataccaaatgctatgttgcttaaagttgtgtattcaatgattaattacttcattatttctatgtgcaatttag