Sequence
atgc intronic sequence ATGC exonic sequenceATGAAGAGGCAGCTGCTGTGCAAGAGCAGGTAATGCAAATAAAGGCTCAAGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGgcatgtcttaaacatatcatgcttactattttcattcatttgcaaagtagttgaggaaattagtacttcagatttttttttatgatatagattatagaag...
Basic information
species | Glycine max |
transcript | GLYMA16G34510.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g51020.1 (Oryza sativa), 5'ss of exon 2
ATGAAGAGGCAGCTGCTGTGCAAGAGCAGGTAATGCAAATAAAGGCTCAAGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGgcatgtcttaaacatatcatgcttactattttcattcatttgcaaagtagtt--gaggaaattagtacttcagatttttttttatgatatagattatagaag--------------------------------------------------------
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ATGAGGAAGCAGCAGCATTGCAAGAGCAAGTAAGGCAGATAAAGGCCCAGGAAGAAGAATTTGAAACTTTTAATCTAAAGATTGTGCATAGAAAAAACAGgtgctctttttctggtccttaattact--tggcatttctttattagttcatttgtattaaaatgatacttggtatcatgcttggtgtttgcgtttgttaatttgtttatctctaacgatattttttaactccattatatcctgctgacaatataacag
upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G015073_T01 (Zea mays), 5'ss of exon 2
ATGAAGAGGCAGCTGCTGTGCAAGAGCAGGTAATGCAAATAAAGGCTCAAGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGgca-tgt-cttaaaca--tatcatgcttactattttcattcatttgcaaagta-gttgaggaaattagtact--tcagatttttttttatgatatagattatagaag---------------------------------------------------------------
|||| || ||||| || |||||||||| || | ||| |||||||| || ||||| || |||||||| |||||||| ||||||||||| || ||||||||| | || ||||| | || | || | | | | | ||| | | || || ||| | | || | | || | || | | | ||
ATGAGGAAGCAGCAGCGTTGCAAGAGCAAGTCAGGCAGATAAAGGCGCAGGAGGAAGAGTTTGAAACGTTCAATCTTAAGATTGTGCATAGAAAAAACAGgtaatgcatttaaatgtttgtcccatattttaatcttactaaagcataaaaaatgatgtggtgattttcagttatctattgtccttgtgtgcctgtgttcacagtgtggcacttaaacctttttataaagtattttgtgtattctaacattatctcctattaattatcag
upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 2
ATGAAGAGGCAGCTGCTGTGCAAGAGCAGGTAATGCAAATAAAGGCTCAAGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGgcatgt--cttaaaca--tatcatgcttactattttcattcatttgcaaagtagt--tgaggaaattagtact--tcagatttttttttatgatatagattatagaag------------------------------------------------------------------
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ATGAGGAAGCAGCAGCATTGCAAGAGCAAGTCAGGCAGATAAAGGTGCAGGAGGAAGAGTTTGAAACTTTCAATCTTAAGATTGTGCATAGAAAAAACAGgtattttctttaaatgattgttccatctgttaatcttgttaaagcataaaaaaatgatatggtaatttccagttatctattgtccttgtgtgcctgtgttcacagtgtggcacctacgccgtatttttaaaagatattttatatcttctaacaccgtctcctgttaattaacag
upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 3
ATGAAGAGGCAGCTGCTGTGCAAGAGCAGGTAATGCAAATAAAGGCTCAAGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGgcatgt--cttaaacatatcatg-cttactattt--tcattcat---ttgcaaagtagttgaggaaattagtacttcagatttttttttatgatatagattat-agaag-------------------------------------
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ATGAGGATGCCATCGTGGTCCAAGAGCAAGTAAGACAGATTCAAGCCCAAGAGCAGGATTTTGAGACCTTCAACCTGAAGATTGTTCACAGGAAAAATAGgtctgttcccttacaatatcgtggtttattatgtattaaatgatgtttcgtacacattttgtttagaagggggatgaagtctgtcccgaatcttgtgaaccctcaggaaatttatttgtttcttctatttgtcttctgttgcccag
upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 2
ATGAAGAGGCAGCTGCTGTGCAAGAGCAGGTAATGCAAATAAAGGCTCAAGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGgcatg-----tcttaaacatatcatgcttactattttcattcatttgcaaagtagttgaggaaattagtacttcagat-ttttttttatgatatagattatagaag
|||||||||| | ||||| |||||||| || | ||||| ||||| ||||||||||| ||||||||||| | || || |||||||| | ||||||||| | | || || | | | | | | ||| | || | | || | | || ||| |||| ||| || ||||
ATGAAGAGGCCGTGGCTGTACAAGAGCAAGTTAGACAAATTAAGGCCCAAGAGGAGGAGTTTGAAACCTTTGACCTCAAAATTGTGCATCGAAAAAACAGgtaagatttctccctaattttttgttttaaattacatcagtaatcgctttatttcctgtttagagagccacacatgatgttttctttttgtctctgattg------
upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 2
ATGAAGAGGCAGCTGCTGTGCAAGAGCAGGTAATGCAAATAAAGGCTCAAGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGgcatgtcttaaacatatcatgctta--ctattttcattcatttgcaaagtagttgaggaaattagtacttcagatttttttttatgatatagattatagaag
|||||||||||| ||||| |||||||| || | ||||| ||||| ||||||||||| ||||||||||| | || || |||||||| | ||||||||| | | || | | | | | || | | || | |||||| | || | | | || | | | | | || | ||
ATGAAGAGGCAGTGGCTGTCCAAGAGCAAGTTAGACAAATTAAGGCCCAAGAGGAGGAGTTTGAAACCTTTGACCTCAAAATTGTGCATCGAAAAAACAGgtaagatttctccccaacttttatggtttaaactaaaacagatagaaagtaagtaagaagttaccttgtttaaaagagcatctgtctctgagtctctact--
upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 8
ATGAAGAGGCAGCTGCTGTGCAAGAGCAGGTAATGCAAATAAAGGCTCAAGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGgcatgtcttaaacatatcatgcttactattttcattcatttgcaaagtagttgaggaaattagtacttcagatttt--tttttatgatatagattatagaag
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ATGAAGAAGCAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAAGCTCAGGAGGAGGAATTTGAGACCTTCAATCTCAAAATTGTGCATAGGAAAAACAGgcatgtctccc-ctcatc-tgaaaaatcttttaaactattaaataactcatcctagttctttgcaggctaatattccattttgaagttacagctgctatcatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|24137018|gb|BU927528.1|BU927528EST: AGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAG AACTGGCTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTACT
genomic: AGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGgcatgtctta ... tgttgctcagAACTGGCTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGAAGAGGCAGCTGCTGTGCAAGAGCAGGTAATGCAAATAAAGGCTCAAGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGgcatgtcttaaacatatcatgcttactattttcattcatttgcaaagtagttgaggaaattagtacttcagatttttttttatgatatagattatagaag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA