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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATAAATTGCTTGATGCGTGTGAGAGAATTGGAGTGGAGACAAATCCAACGGTTATAGATGAAATAGGAATCATTCCTTTGTTCTCTTGGTACCATGAGgtgattacttctaaagtgacaatttttagctcctcagtctttcataccatgtattggtctggatccaaagtgttacttaagggaaatttatttaaatgctcaacctgcttctttgacag

Basic information

species Glycine max
transcript GLYMA16G33520.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G33520.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0039g00160.t01 (Vitis vinifera), 5'ss of exon 2
GAATAAATTGCTTGATGCGTGTGAGAGAATTGGAGTGGAGACAAATCCAACGGTTATAGATGAAATAGGAATCATTCCTTTGTTCTCTTGGTACCATGAGgtgattacttctaaagtgacaatttttagctcctcagtctttcataccatgtattggtctggatccaaagtgttacttaagggaa---atttatttaaatgc----tcaacc----tgcttctttgacag
|||||| || |||||||||||| | ||| | |||||| | || | ||||| | |||||||||   | |||||||||||||| ||||||||||| ||||||||||||  || |  | |    | || || ||| | |   |||  ||    || |||      |||    |  ||  | || | ||   || |  || | | |    | ||      |||||||||  |||
GAATAAGTTACTTGATGCGTGTAAAAGACTCGGAGTGCAAACCAGTCCAATGATTATAGATGGCTTGGGAATCATTCCTTTATTCTCTTGGTATCATGAGgtgattggttttgtaat--ttagttctacctcttga--ttttagtatgcagtcttgaatcatatctggtggcttgatcaaagtaatgcatattcttcagtccattgttaattgtgatgcttcttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304728|gb|FG994978.1|FG994978
EST:     CGGTTATAGATGAAATAGGAATCATTCCTTTGTTCTCTTGGTACCATGAG                         AGCTTTGACAAAGAGAAGGACATAACAGGCTTTCGCATCCCGTCTTTGGAG
genomic: CGGTTATAGATGAAATAGGAATCATTCCTTTGTTCTCTTGGTACCATGAGgtgattactt ... tctttgacagAGCTTTGACAAAGAGAAGGACATAACAGGCTTTCGCATCCCGTCTTTGGAG
EST: gi|192294175|gb|FG986264.1|FG986264
EST:     CGGTTATAGATGAAATAGGAATCATTCCTTTGTTCTCTTGGTACCATGAG                         AGCTTTGACAAAGAGAAGGACATAACCGGCTTTCGCATCCCGTCTTTTGGA
genomic: CGGTTATAGATGAAATAGGAATCATTCCTTTGTTCTCTTGGTACCATGAGgtgattactt ... tctttgacagAGCTTTGACAAAGAGAAGGACATAACAGGCTTTCGCATCCCGTCTTT-GGA
EST: gi|27423811|gb|CA935331.1|CA935331
EST:     CGGTTATAGATGAAATAGGAATCATTCCTTTGTTCTCTTGGTACCATGAG                         AGCTTTGACAAAGAGAAGGACATAACAGGCTTTCGCATCCCGTCTTTGGAG
genomic: CGGTTATAGATGAAATAGGAATCATTCCTTTGTTCTCTTGGTACCATGAGgtgattactt ... tctttgacagAGCTTTGACAAAGAGAAGGACATAACAGGCTTTCGCATCCCGTCTTTGGAG
EST: gi|7796310|gb|AW781707.1|AW781707
EST:     CGGTTATAGATGAAATAGGAATCATTCCTTTGTTCTCTTGGTACCATGAG                         TGCTTTGACAAAGAGAAGGACATAACAGGCTTTCGCATCCCGTCTTTGGAG
genomic: CGGTTATAGATGAAATAGGAATCATTCCTTTGTTCTCTTGGTACCATGAGgtgattactt ... tctttgacagAGCTTTGACAAAGAGAAGGACATAACAGGCTTTCGCATCCCGTCTTTGGAG