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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACAAGATAGGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAGgtatgattctgaaatactgaaaactattatcttatggttgagtttttttatattcattccaccacctgtgttacatctagaatggtttttctttacaaaa...

Basic information

species Glycine max
transcript GLYMA16G33160.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12774717|gb|BG239644.1|BG239644
EST:     GGAAGGCAAGACTAAAGATTCCACCACCTGATAC-AGCTAGAAAACCGAG                         GTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
genomic: GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAGgtatgattct ... ggcattacagGTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
EST: gi|16105719|gb|BI893459.1|BI893459
EST:     GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAG                         GTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
genomic: GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAGgtatgattct ... ggcattacagGTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
EST: gi|209697598|gb|BW663851.1|BW663851
EST:     GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAG                         GTTTGAAATGGCTGTGTCACTGTGGAGAAGACGCACTGCTTCATCTGCACT
genomic: GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAGgtatgattct ... ggcattacagGTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
EST: gi|209704046|gb|BW673646.1|BW673646
EST:     GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAG                         GTTTGAAATGGCTGTGTCACTGTGGAGAAGACGCACTGCTTCATCTGCACT
genomic: GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAGgtatgattct ... ggcattacagGTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
EST: gi|213615364|gb|DB965478.1|DB965478
EST:     GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAG                         GTTTGAAATGGCTGTGTCACTGTGGAGAAGACGCACTGCTTCATCTGCACT
genomic: GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAGgtatgattct ... ggcattacagGTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
EST: gi|19347239|gb|BM892119.1|BM892119
EST:     GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAG                         GTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
genomic: GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAGgtatgattct ... ggcattacagGTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
EST: gi|151410328|gb|EV280143.1|EV280143
EST:     GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAG                         GTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
genomic: GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAGgtatgattct ... ggcattacagGTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
EST: gi|298187824|gb|HO031781.1|HO031781
EST:     GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAG                         GTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
genomic: GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAGgtatgattct ... ggcattacagGTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
EST: gi|151412485|gb|EV282297.1|EV282297
EST:     GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAG                         GTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
genomic: GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAGgtatgattct ... ggcattacagGTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
EST: gi|192323171|gb|FK018942.1|FK018942
EST:     GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAG                         GTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
genomic: GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAGgtatgattct ... ggcattacagGTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
EST: gi|18710356|gb|BM522494.1|BM522494
EST:     GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAG                         GTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT
genomic: GGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAGgtatgattct ... ggcattacagGTTTGAAATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCACAAGATAGGAAGGCAAGACTAAAGATTCCACCACCTGATACAAGCTAGAAAACCGAGgtatgattctgaaatactgaaaactattatcttatggttgagtttttttatattcattccaccacctgtgttacatctagaatggtttttctttacaaaa

- - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccacc