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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAAgtgagttcattgttgttgtcgtttttcagtgactttattggattgttgtgtgagtgtgtgttttgagggttgtgtggtttggttcag

Basic information

species Glycine max
transcript GLYMA16G32900.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409668|gb|EV279476.1|EV279476
EST:     GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA                         GTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
genomic: GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAAgtgagttcat ... tttggttcagGTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
EST: gi|298173736|gb|HO017072.1|HO017072
EST:     GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA                         GTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
genomic: GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAAgtgagttcat ... tttggttcagGTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
EST: gi|21255639|gb|BQ452527.1|BQ452527
EST:     GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA                         GTGGTCGGAGAGGTTGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGA
genomic: GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAAgtgagttcat ... tttggttcagGTGGTCGGAGAGG-GGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGA
EST: gi|192294928|gb|FG987596.1|FG987596
EST:     GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA                         GTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATCGGAAGCGAG
genomic: GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAAgtgagttcat ... tttggttcagGTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
EST: gi|213603660|gb|DB966802.1|DB966802
EST:     GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA                         GTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
genomic: GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAAgtgagttcat ... tttggttcagGTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
EST: gi|213596607|gb|DB958220.1|DB958220
EST:     GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA                         GTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
genomic: GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAAgtgagttcat ... tttggttcagGTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
EST: gi|298168134|gb|HO013397.1|HO013397
EST:     GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA                         GTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
genomic: GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAAgtgagttcat ... tttggttcagGTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
EST: gi|14990899|gb|BI316572.1|BI316572
EST:     GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA                         GTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
genomic: GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAAgtgagttcat ... tttggttcagGTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
EST: gi|10847829|gb|BF070447.1|BF070447
EST:     GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA                         GTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
genomic: GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAAgtgagttcat ... tttggttcagGTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
EST: gi|21255849|gb|BQ452737.1|BQ452737
EST:     GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA                         GTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
genomic: GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAAgtgagttcat ... tttggttcagGTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
EST: gi|22931782|gb|BU548921.1|BU548921
EST:     GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA                         GTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG
genomic: GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAAgtgagttcat ... tttggttcagGTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAG