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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACCAAGTGGGAGGCCTCCAAGTTTTTGTTGACAATGAGTGGCATTCCGTTAGCCCAAATTTCAATGCTTTTGTTGTCAACATAGGTGACACCTTCATGgtatgtttggtcttgtctttgaatgcacctatcttaatttggcaaacaatggtttttcctgtgtgatgttgtcattcttattcatccttgtttttgattatgtgtag

Basic information

species Glycine max
transcript GLYMA16G32550.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32550.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0022g02310.t01 (Vitis vinifera), 5'ss of exon 2
AGACCAAGTGGGAGGCCTCCAAGTTTTTGTTGACAATGAGTGGCATTCCGTTAGCCCAAATTTCAATGCTTTTGTTGTCAACATAGGTGACACCTTCATGgtatgtttggtcttgtctttgaatgcacctatct------taatttgg--caaacaatggtttttcctgtgtgatgttgtcattcttattcatccttgtttttgattatgtgtag------------------------------------------------
 ||||||||||| ||||| ||||| ||||| ||  |  | |||   ||| |||||||||||||| |||| |||||||| ||||| || |||||||||||||||   |   ||  || ||   |  | |   | |      |  ||||   |||| || ||||||||       | ||| ||||| || |||||  ||  ||||  || | ||                                                   
GGACCAAGTGGGTGGCCTTCAAGTGTTTGTAGATGACAAATGGTGGTCCATTAGCCCAAATTTCGATGCCTTTGTTGTTAACATCGGCGACACCTTCATGgtaacctgaatcacgttttcacagacccacttttagttactgttttgcttcaaaaaaaggtttttc--aaaaaaggttttcattttttttcattttttctttttcttttttggtttttagtggttgatcataagtgctttgtggggtttttgccatctttcag