1 5' 3' | 2 5' 3' | 3 5' 3' |
TCGGAACCTTGGGATCGCATTTCTGAATCGGCTAAGGATTTGATCAGGGGAATGCTCTCCACAGACCCATCTCGAAGGCTCACTGCCCGAGAGGTTTTAGgtaagcttacttcttttcttccccttgctaatgcctatctgccaaagttgttttatttagatttcacattggagttaagatagcatttttgccaaacagg...
species | Glycine max |
transcript | GLYMA16G32390.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCCACAGACCCATCTCGAAGGCTCACTGCCCGAGAGGTTTTAG ATCATTACTGGATGGAATGCAACCAAACAAATCCTGAACAGCTAAGTGAATEST: gi|9566064|gb|BE475502.1|BE475502
genomic: TCCACAGACCCATCTCGAAGGCTCACTGCCCGAGAGGTTTTAGgtaagcttac ... ccccttctagATCATTACTGGATGGAATGCAACCAAACAAATCCTGAACAGCTAAGTGAAT
EST: AATGCTCTCCACAGACCCATCTCGAAGGCTCACTGCCCGAGAGGTTTTAG ATCATTACTGGATGGAATGCAACCAAACAAATCCTGAACAGCTAAGTGAATEST: gi|22541719|gb|BU091562.1|BU091562
genomic: AATGCTCTCCACAGACCCATCTCGAAGGCTCACTGCCCGAGAGGTTTTAGgtaagcttac ... ccccttctagATCATTACTGGATGGAATGCAACCAAACAAATCCTGAACAGCTAAGTGAAT
EST: AATGCTCTCCACAGACCCATCTCGAAGGCTCACTGCCCGAGAGGTTTTAG ATCATTACTGGATGGAATGCAACCAAACAAATCCTGAACAGCTAAGTGAATEST: gi|254344255|gb|GR851058.1|GR851058
genomic: AATGCTCTCCACAGACCCATCTCGAAGGCTCACTGCCCGAGAGGTTTTAGgtaagcttac ... ccccttctagATCATTACTGGATGGAATGCAACCAAACAAATCCTGAACAGCTAAGTGAAT
EST: AATGCTCTCCACAGACCCATCTCGAAGGCTCACTGCCCGAGAGGTTTTAG ATCATTACTGGATGGAATGCAACCAAACAAATCCTGAACAGCTAAGTGAAT
genomic: AATGCTCTCCACAGACCCATCTCGAAGGCTCACTGCCCGAGAGGTTTTAGgtaagcttac ... ccccttctagATCATTACTGGATGGAATGCAACCAAACAAATCCTGAACAGCTAAGTGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGGAACCTTGGGATCGCATTTCTGAATCGGCTAAGGATTTGATCAGGGGAATGCTCTCCACAGACCCATCTCGAAGGCTCACTGCCCGAGAGGTTTTAGgtaagcttacttcttttcttccccttgctaatgcctatctgccaaagttgttttatttagatttcacattggagttaagatagcatttttgccaaacagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcccc