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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACTTGCATTTGGCTGCACGCTGGAGTTGTTCATTTGGCTGCCAACATGTTGAGCCTGGTCTTCATTGGCATTCGTCTTGAACAACAATTTGGGTTTGgtatgtttcttttttctgcttatttcaggttatacacaaaattaggaaataaaaaaattcaagttttagttttatacctttggacatggtcaccccatttggaagtgttcatgttcttttgtgttcttcaaattttgcttttgaatggttatgacctgacatttttcaaaacggcag

Basic information

species Glycine max
transcript GLYMA16G32150.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32150.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G157384_T01 (Zea mays), 5'ss of exon 2
GTCACTTGCATTTGGCTGCACGCTGGAGTTGTTCATTTGGCTGCCAACATGTTGAGCCTGGTCTTCATTGGCATTCGTCTTGAACAACAATTTGGGTTTGgtatgtttcttttttctgcttatttcaggttatacacaaaattaggaaataaaaaaattcaagtttt--agttttatacctttggacatggtcaccccatttggaagtgttcatgttcttttgtgttcttcaaattttgcttttgaatggttatgacctgacatttttcaaaacggcag
 | |  || || ||||| || |||||  | ||||| |||| || ||||||| | ||| || |||||||||| || || ||||| ||||||||||||||||||| | |||||   |  |||| ||   ||||         || |  | || |     || | ||||   ||||||  |||||  ||  |||  ||   | |    | ||||                                                                    
ATTAGCTGTATCTGGCTCCATGCTGGCCTAGTTCACTTGGTTGTCAACATGCTAAGCTTGCTCTTCATTGGAATCCGCCTTGAGCAACAATTTGGGTTTGgtaagcttcttacataggcttgtt---ggttcactctgccatcaccacatta-----tttatgtttcccagttttgcacctt--gat-tggatacttgactatccattgtt--------------------------------------------------------------------

upper sequence: GLYMA16G32150.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0100g00640.t01 (Vitis vinifera), 5'ss of exon 2
GTCACTTGCATTTGGCTGCACGCTGGAGTTGTTCATTTGGCTGCCAACATGTTGAGCCTGGTCTTCATTGGCATTCGTCTTGAACAACAATTTGGGTTTGgtatgtttcttttttctgcttatttcaggttatacacaaaattaggaaataaaaaaattcaagttttagttttatacctttggacatggtcaccccatttggaagtgttcatgttcttttgtgttcttcaaattttgcttttgaatggttatgacctgacatttttcaaaacggcag
||||||||||| ||| | || |||||  |  ||||| ||  ||  |||||||||||| ||||||| ||||| ||||| || ||||| |||||||| ||||||||||    || |  ||||| |     ||| |     |  |||||             |   |   | |    | ||| ||||||| || | |             | ||| |  ||||                                                         
GTCACTTGCATCTGGTTACATGCTGGTATCATTCATCTGCTTGTAAACATGTTGAGCTTGGTCTTGATTGGTATTCGACTCGAACAGCAATTTGGTTTTGgtatgtg--gttctcttgcttttagtgtgttgtcattcaccttagg-------------ctgatccgactcccttgcctctggacattgttatcttcccat------tccatatcatttta--------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294215|gb|FG986304.1|FG986304
EST:     GTTGAGCCTGGTCTTCATTGGCATTCGTCTTGAACAACAATTTGGGTTTG                         TGAGGATAGGAATTATTTACTTGTTGTCTGGATTCGGCGGGAGTGTACTAT
genomic: GTTGAGCCTGGTCTTCATTGGCATTCGTCTTGAACAACAATTTGGGTTTGgtatgtttct ... aaaacggcagTGAGGATAGGAATTATTTACTTGTTGTCTGGATTCGGCGGGAGTGTACTAT