Sequence
atgc intronic sequence ATGC exonic sequenceAAGTCGCACGCCTGCGTCAAGGAGAAAGTCTATCTCAGAGGACTCTTTCACCGTCTCAGAGCACTCATTGCGCTCAATTGCAGCCTCATCTTCGTCTCAGgtttctcacattgtcttttgtttccttcacttaaacacagagggtgcagcattgttagttcagttgtgagaaacactgatggagactgacttaactttaa...
Basic information
species | Glycine max |
transcript | GLYMA16G31860.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G31860.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G021674_T01 (Zea mays), 5'ss of exon 2
AAGTCGCACGCCTGCGTCAAGGAGAAAGTCTATCTCAGAGGACTCTTTCACCGTCTCAGAGCACTCATTGCGCTCAATTGCAGCCTCATCTTCGTCTCAGgtt---tctcacattgtcttttgtttccttcacttaaacacagagggtgcagcattgttagttcagttgtgagaaacactgatggagactgacttaactttaa-------------
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CGCTCCCCGGCCTTCCTCAGGGACAAGGTGTACCTCAAGAACCTCTTCCACCGCATCCGAGCCCTCATCGCCCTCAACTGCAGCCTCATTTTCGTCTCAGgttctctctcaccgtttcttttaggacccggaaatggcaatgcataatg--gccatgttgaatcag--ataacaaat-cagcctaaaatttcttcatttctcgctcttgccttcag
upper sequence: GLYMA16G31860.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0100g01300.t01 (Vitis vinifera), 5'ss of exon 2
AAGTCGCACGCCTGCGTCAAGGAGAAAGTCTATCTCAGAGGACTCTTTCACCGTCTCAGAGCACTCATTGCGCTCAATTGCAGCCTCATCTTCGTCTCAGgtttct-cacattgt-cttttgtttccttca--cttaaacacagaggg----tgcagcattgttagttcagttgtgagaaacactgatggagactgacttaactttaa
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AAATCTCATGCTTCAATCAAGGACAAGCTTTATCTCAAAGGCCTCTTTCACCGTCTTAGAGCTCTCATTGCTTTGAATTGTAGCCTTCTTTTTGTCACAGgtatgtgtattttccactttggttgccttcaattttgacttcagatgtaaactggaactgggtattgccttttgtggaaattagtattgggtttagacta--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|12690026|gb|BG156362.1|BG156362EST: CCGTCTCAGAGCACTCATTGCGCTCAATTGCAGCCTCATCTTCGTCTCAG ATGGAGCTATTCCTGCCATCAAATTATCAACCTATAGGCGTCGCTTAAATG
genomic: CCGTCTCAGAGCACTCATTGCGCTCAATTGCAGCCTCATCTTCGTCTCAGgtttctcaca ... tatctggtagATGGAGCTATTCCTGCCATCAAATTATCAACCTATAGGCGTCGCTTAAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGTCGCACGCCTGCGTCAAGGAGAAAGTCTATCTCAGAGGACTCTTTCACCGTCTCAGAGCACTCATTGCGCTCAATTGCAGCCTCATCTTCGTCTCAGgtttctcacattgtcttttgtttccttcacttaaacacagagggtgcagcattgttagttcagttgtgagaaacactgatggagactgacttaactttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccttcac