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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTAGAGAGTGGCCAGGGAGTTCATATGATCTGCTGTCCAAAAACTGCAATCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAGgtaaacatgtaactatgttactataatgttgcttttatgatgttcattgttatttttttgctcgatgatggcctagcggtatatagggatgtatcatgta...

Basic information

species Glycine max
transcript GLYMA16G29860.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G29860.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G25660.1 (Arabidopsis thaliana), 5'ss of exon 2
AGTAGAGAGTGGCCAGGGAGTTCATATGATCTGCTGTCCAAAAACTGCAATCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAGgtaaacatgtaactatgttactataatgttgcttttatgatgttcattgttatttttttgctcgatgatggcctagcggtatatagggatgtatcatgta
|| || || ||||||||     | |||||| ||||||||||||| ||||||||||| || |||| ||| |||||  | |||||||| |||||  | |||||||||    | | | ||  |  || | | |   | | || |||| || ||||| |    ||| |      | ||      |                   
AGCAGGGAATGGCCAGGACACACTTATGATTTGCTGTCCAAAAATTGCAATCACTTCTGCGATGTATTATGTGACCGCCTTGGTGTGCCAAAGATCCCAGgtaaaaccattattgtggga--atcagggtttgtgtgtg-tgtttat-gttatgtgacggcttgggttctgtctcttaacag------------------

upper sequence: GLYMA16G29860.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G25680.1 (Arabidopsis thaliana), 5'ss of exon 2
AGTAGAGAGTGGCCAGGGAGTTCATATGATCTGCTGTCCAAAAACTGCAATCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAGgtaaacatgtaactatgttactataatgttgcttttatgatgttcattgttatttttttgctcgatgatggcctagcggtatatagggatgtatcatgta----
|| || || ||||| ||     | |||||| || |||| ||||| ||||||||||| || |||| | |||||||  |||||||||| |||||  | |||||||||       | || ||     ||| | |  | | || |||     ||   |||| |  || | | |    |  |||  |   ||| | | ||   ||    
AGCAGGGAATGGCCTGGACACACTTATGATTTGTTGTCAAAAAATTGCAATCACTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAAGATCCCAGgtaaa------gccattttttgggaatctggtgtgtgtg-tgt-----gtgtgttttgtcttcaaggcttatgtgacggctt---gggttctgtctcttaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016567|gb|CX703309.1|CX703309
EST:     TCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAG                         GCTGGGTGAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTG
genomic: TCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAGgtaaacatgt ... tccatgacagGCTGGGTGAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTG
EST: gi|21888915|gb|BQ742128.1|BQ742128
EST:     TCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAG                         GCTGGGTGAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTG
genomic: TCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAGgtaaacatgt ... tccatgacagGCTGGGTGAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTG
EST: gi|193523744|gb|FK482203.1|FK482203
EST:     TCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAG                         GCTGGGTTAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTG
genomic: TCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAGgtaaacatgt ... tccatgacagGCTGGGTGAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTG
EST: gi|193492066|gb|FK453482.1|FK453482
EST:     TCACTTTTGTGATGAATTCTGTGAAAGGTTTGGTGTACCAAAACTTCCAG                         GCTGGGTTAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTG
genomic: TCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAGgtaaacatgt ... tccatgacagGCTGGGTGAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTG