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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAAATGGTGTGCCATGTAACAGCAGACAATCTGTCATCAGACTTGTGGGCATGGCGAAAATATGGGCAAAAACCCATCAAAGGCTCTCCATATCCAAGgtaaataaataaataatcaagcacatgtaattatgcaaaacattccctcatagtctcatcaccttcacagtaacatatccataacattacactattgaatttcactctcatcacgagaaattcattcagaatactaaatccacaacattactttgaactgtaatttctatag

Basic information

species Glycine max
transcript GLYMA16G29560.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G29560.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G52830.1 (Arabidopsis thaliana), 5'ss of exon 2
AGAAAATGGTGTGCCATGTAACAGCAGACAATCTGTCATCAGACTTGTGGGCATGGCGAAAATATGGGCAAAAACCCATCAAAGGCTCTCCATATCCAAGgtaaataaataaataatcaagcacatgtaattatgcaaaacattccctcatagtctca--tcaccttcacagtaacatatccataacattacactattgaatttcactctcatcacgagaaattcattcagaatactaaatccacaacattactttgaactgtaatttctatag
| | ||   | || ||||||||   ||| ||||| || || || |||||||| ||||| ||||| || ||||||||||||||||||||||| |||||||||| |  |   |  |  |     | || |  | | | |||| ||     |||  | | |  | |  |    | |||   |   || |||| | ||                                                                                
AAAGAACCATATGTCATGTAACGCAAGAGAATCTTTCTTCTGATTTGTGGGCTTGGCGTAAATACGGTCAAAAACCCATCAAAGGCTCTCCTTATCCAAGgttatcatcaatctttttttcaaaattttctcaagaaaaaaatattaacatttttttaattaatgtgttaattaatcgagttattacataaaacag------------------------------------------------------------------------------