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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgtaatcagcaactaagagaaatacatatttattcttttttggctaagctaaatggtagaaatgtgaataattgctggaaaatttgaataattt...

Basic information

species Glycine max
transcript GLYMA16G28300.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G28300.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g64690.1 (Oryza sativa), 5'ss of exon 2
GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgtaatcagcaactaa-gagaaatacatatttattcttttttggctaagctaaatggtagaaatgtgaataattgctggaaaatttgaataattt-----
|| || ||||| ||| | || ||||||||||| |||||||| || || || || ||||| || || || ||||||||||| |||||||||||| | |||||| ||  | | |   |   |  || |   |  | | |  ||||     |||  |     ||    | |   | |   |||   |  |||| | ||       
GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGCgtaagt-gttttgaccttttgttgcaaattttgtgatcagtacttttga---aagtcatgctataattgttttggttaaccctgacca--ttgattgatgatggaa

upper sequence: GLYMA16G28300.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G76860.1 (Arabidopsis thaliana), 5'ss of exon 2
GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgtaatcagcaactaagag--aaatacatatttattcttt-----tttggctaagctaaatggtagaaatgtgaataattgctggaaaatttgaataattt
|| | |||||||||| | ||||||||||| |||||||||||||||| | | |||||||| ||||||||||| |||||||| ||||| |||||  ||||| ||  |  |    |   || ||  || |  |||  ||||         | | | | || |      |  |  |  | ||| ||| | || ||   |        
GCGTTTGATCAGCATTTGAATATGATTCTGGGTGATGTTGAAGAAACTATCACTACAGTAGAAATCGATGACGAGACATATGAAGAGATTGTTCGGgtacgtgctttttcttactcaatagttaactttataggtatttgagggggatcttgatgagtttctatctcaagttaaggata-ttgttagagaacaagtg------

upper sequence: GLYMA16G28300.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G21190.1 (Arabidopsis thaliana), 5'ss of exon 2
GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgtaatcagcaactaagagaaatacatatttattcttttttggctaagctaaatggtagaaatgtgaataattgctggaaaatttgaataattt------
|||| |||||||||| | ||||||||||| ||||||||||||||  || |||| ||  | |||||||| || |||||||| ||||| |||||  ||||| ||  |  ||   | || |   | ||  |   ||| ||| | | ||||    ||  |   | ||| ||   |   | |   || |||| |   ||        
GCTTTTGATCAGCATTTGAATATGATTCTGGGTGATGTTGAAGAGGTTATTACGACTATAGAAATCGACGACGAGACATATGAAGAGATTGTTCGGgtatgtaattctct-tagctcaataagattta---ttaatctatgtaggctttagtag-taagataaacgtttttgggttc-aaaatatttcagctatcacagtat

upper sequence: GLYMA16G28300.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0072g00710.t01 (Vitis vinifera), 5'ss of exon 2
GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgtaatcagcaactaagagaaatacatatttattcttttttggctaagctaaatggtagaaatgtgaataattgctggaa--aatttgaataattt-----------------------------------------------------------------------------------------
|| |||||||||||| | || |||||||||||||||||||||||||||||||||||||| |||||||| ||||| || || |||||||||||  | ||| | | | | | |    |      | | | |  |||   | | | |  |     || ||  | ||    ||| |    |||| |  ||  | | |                                                                                              
GCCTATGATCAGCATTTGAACATGATTCTTGGTGATGTTGAAGAAATTGTTACTACAGTAGAAATCGACGATGAAACTTATGAAGAAATTGTTCGAgtatgctctcaactg-gcttccttttacttctttcttaaattatctggtttggtagaactgaaacaatccagaagatccactggcataaacataactgcaccaccacaagccccaatcccccaccctgctgagaggaattaaataaataagcataacaagaatgtttctggaatttttttttttttgatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409537|gb|EV279345.1|EV279345
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298184281|gb|HO029494.1|HO029494
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|8286069|gb|BE023628.1|BE023628
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298180451|gb|HO022004.1|HO022004
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|192333290|gb|FK026171.1|FK026171
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298174518|gb|HO017741.1|HO017741
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|24206304|gb|BU965557.1|BU965557
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298164591|gb|HO014236.1|HO014236
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|151410083|gb|EV279891.1|EV279891
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298163866|gb|HO012599.1|HO012599
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|18041190|gb|BM309484.1|BM309484
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298185779|gb|HO028090.1|HO028090
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298182715|gb|HO031450.1|HO031450
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298188300|gb|HO034993.1|HO034993
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|22928407|gb|BU545546.1|BU545546
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298178093|gb|HO027476.1|HO027476
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAACTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|151406886|gb|EV276701.1|EV276701
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|151406776|gb|EV276591.1|EV276591
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACGGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|192333289|gb|FK026170.1|FK026170
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|19271241|gb|BM887497.1|BM887497
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298174185|gb|HO017521.1|HO017521
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298167122|gb|HO010561.1|HO010561
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|151394792|gb|EV264663.1|EV264663
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|31456885|gb|CD398913.1|CD398913
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|151395130|gb|EV265001.1|EV265001
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298175596|gb|HO015115.1|HO015115
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|192327363|gb|FK019580.1|FK019580
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|192327791|gb|FK022070.1|FK022070
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298186503|gb|HO037136.1|HO037136
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|192327790|gb|FK022069.1|FK022069
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298171111|gb|HO016143.1|HO016143
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298186178|gb|HO036811.1|HO036811
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGCGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298186274|gb|HO036907.1|HO036907
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298199208|gb|HO042571.1|HO042571
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATC
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|31469628|gb|CD411656.1|CD411656
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298170134|gb|HO018758.1|HO018758
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|193438431|gb|FK401806.1|FK401806
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTAACAAAGCGGACAGTTACCTTTAACCTGTTTGTCAGGG
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTA-CAAAGCGGACAGTT-CCTTT--CCTGTTTGTCAGGG
EST: gi|298164448|gb|HO014093.1|HO014093
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|298196577|gb|HO041320.1|HO041320
EST:     TTGTTACTACAGCGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
EST: gi|19271075|gb|BM887331.1|BM887331
EST:     TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGG                         ACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA
genomic: TTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgta ... ctgattgcagACTACAAAGCGGACAGTTCCTTTCCTGTTTGTCAGGGGAGATGGGGTGATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACTACAGTGGAAATCGATGATGAGACATACGAAGAAATTGTGAGGgtaagttgtaatcagcaactaagagaaatacatatttattcttttttggctaagctaaatggtagaaatgtgaataattgctggaaaatttgaataattt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagaaa