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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCATTGATGACATCAGAGCTATTATCCATAAGGAGTGTGGAAGGATCGTTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctcttcatccctcttacctttacttgcactactattttggttctcaaaaccctctgctcttactaactatagttttgaagcttttctttgtgata...

Basic information

species Glycine max
transcript GLYMA16G27880.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995135|gb|CF806724.1|CF806724
EST:     TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
genomic: TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
EST: gi|213594657|gb|DB959796.1|DB959796
EST:     TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
genomic: TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
EST: gi|33390085|gb|CA853292.1|CA853292
EST:     TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
genomic: TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
EST: gi|37994902|gb|CF806491.1|CF806491
EST:     TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
genomic: TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
EST: gi|209713868|gb|BW684061.1|BW684061
EST:     TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
genomic: TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
EST: gi|21256701|gb|BQ453589.1|BQ453589
EST:     TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCCG
genomic: TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCCG
EST: gi|151399481|gb|EV269352.1|EV269352
EST:     TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
genomic: TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
EST: gi|254341381|gb|GR855109.1|GR855109
EST:     GATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCCGA-TATGCAGTGCCACTAGGAAGACGAGATGG-CTGAGC
genomic: GATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
EST: gi|254341011|gb|GR854739.1|GR854739
EST:     TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
genomic: TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
EST: gi|192299907|gb|FG991781.1|FG991781
EST:     TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
genomic: TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
EST: gi|37995063|gb|CF806652.1|CF806652
EST:     TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
genomic: TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
EST: gi|16347652|gb|BI973247.1|BI973247
EST:     TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
genomic: TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
EST: gi|23728490|gb|BU762300.1|BU762300
EST:     TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCC
genomic: TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCC
EST: gi|254341380|gb|GR855108.1|GR855108
EST:     TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
genomic: TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
EST: gi|254338193|gb|GR845549.1|GR845549
EST:     TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
genomic: TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
EST: gi|37995893|gb|CF807482.1|CF807482
EST:     TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
genomic: TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
EST: gi|37994018|gb|CF805764.1|CF805764
EST:     TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
genomic: TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
EST: gi|213612248|gb|DB956901.1|DB956901
EST:     TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTT                         ACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC
genomic: TTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctctt ... ctttgaacagACAGGAGGTCCCGATTATGCAGTGCCACTAGGAAGACGAGATGGCCTGAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACCATTGATGACATCAGAGCTATTATCCATAAGGAGTGTGGAAGGATCGTTTCTTGCGCAGATATCACTGTTTTGGCAGCACGTGATTCAGTTTTCCTTgtaatctcttcatccctcttacctttacttgcactactattttggttctcaaaaccctctgctcttactaactatagttttgaagcttttctttgtgata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctgc