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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAACTTTATCAGTGGATTTTTAGACAACAAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaagattgaatgtttttagccctgtgatttcatggtgaataatatccttgggaatttggtctttaactgagcccaatgtgtcatgcaatccatct...

Basic information

species Glycine max
transcript GLYMA16G27830.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207755840|gb|GD728377.1|GD728377
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|21889635|gb|BQ742848.1|BQ742848
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|207790391|gb|GD760828.1|GD760828
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|207753182|gb|GD723704.1|GD723704
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|208102128|gb|GD899109.1|GD899109
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|208053659|gb|GD850576.1|GD850576
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACC
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACC
EST: gi|298173321|gb|HO016657.1|HO016657
EST:     AAGAAGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATCCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|193645105|gb|FK587847.1|FK587847
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|193626759|gb|FK574439.1|FK574439
EST:     TACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: TACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|208268511|gb|GE072502.1|GE072502
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|208051236|gb|GD846739.1|GD846739
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|193340816|gb|FK308773.1|FK308773
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|193606568|gb|FK557853.1|FK557853
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|208258863|gb|GE057158.1|GE057158
EST:     AAGA-GGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|208089390|gb|GD890333.1|GD890333
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|207747121|gb|GD719770.1|GD719770
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|22525222|gb|BU084033.1|BU084033
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|207803351|gb|GD774900.1|GD774900
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|208076532|gb|GD873949.1|GD873949
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAAC
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAAC
EST: gi|207695264|gb|GD678061.1|GD678061
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCAACC
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCA-CC
EST: gi|208146928|gb|GD949243.1|GD949243
EST:     AAGAGGGAGGATCGCGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|193309323|gb|FK277503.1|FK277503
EST:     AGAGGGAGGATCACGGGTTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCCATCTATGTCACCTAGAGCACC
genomic: AGAGGGAGGATCACGGG-TTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAA-CCATCTATGTCACCTAGAGCACC
EST: gi|193582937|gb|FK543149.1|FK543149
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGT
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGT
EST: gi|193600863|gb|FK550400.1|FK550400
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|21889228|gb|BQ742441.1|BQ742441
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|207707881|gb|GD689816.1|GD689816
EST:     AAGAGGGAGGATCGCGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|5510278|gb|AI856662.1|AI856662
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|207681929|gb|GD662480.1|GD662480
EST:     AGGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: A-GAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|193614946|gb|FK564230.1|FK564230
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|208105741|gb|GD906978.1|GD906978
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
EST: gi|207702973|gb|GD686459.1|GD686459
EST:     AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAG                         AATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA
genomic: AAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaaga ... cctcttgcagAATGAGCTGGATTATTGTGGAGAAGAACCATCTATGTCACCTAGAGCACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAAACTTTATCAGTGGATTTTTAGACAACAAGAGGGAGGATCACGGGTTGGAACAGTTGATGTACTTAATTACATTCAGgttggtaagattgaatgtttttagccctgtgatttcatggtgaataatatccttgggaatttggtctttaactgagcccaatgtgtcatgcaatccatct

- - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - -  GAGGAT