Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCGTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgggctgagctttatctattggttcattcactaatgccttcagaagttaatattcactttttagccattgacag

Basic information

species Glycine max
transcript GLYMA16G27820.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g40090.4 (Oryza sativa), 5'ss of exon 3
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCGTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgggctgagctttatctattggttcattcactaatgccttcagaagttaatattcacttt----ttagccattgacag
|||||| |||||||| ||  | ||||| ||  |  |||| ||||| || |||||||| |||||||||||| | ||||||||||| |||||||||||||| ||| |  | |   |  ||||  |  |  |  ||||| |  |    |     |   ||| | | |||    | |  | |   |||
TTTACCATTGCCAGAACTCGTTAAATTCGTCTTTTTTGCAAACTTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgggaagagt--aattttaaatccttctatattcaatgttagaatggagggcacatactaattttcgtttcatgcctcttcag

upper sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g12490.1 (Oryza sativa), 5'ss of exon 3
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCGTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgggctgagctttatctattg--gttca--ttcactaatgccttcagaagttaatattcactttttagccattgacag
 |||||  ||||||| ||  ||||||||||  |  |||| ||| | || |||||||| |||||||||||| | ||||||||||| ||||||||||| || ||||     |   | ||   ||  ||   |||||  || |  | ||  | || |   |||| | | | |  | ||| ||  |||
CTTACCAGTGCCAGAACTAATAAAATTTGTCTTTTTTGCAAACCTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTACCAGgtgaagaaagt--aactaagtcctttaatgttcacttttagaattggatgcatatactaatttgctcctcat-gcctttttcag

upper sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCGTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgggctgagcttta----tctattggttcattcactaatgccttcagaagttaatattcactttttagccattgacag
|||||| || ||||| ||  |||| ||||   |  |||| ||| | || || || |||||||| |||||| | ||||||||||| |||||||||||||| |||||  ||    | ||||     |||||  ||  |||      |      | |   ||||  |   | | | ||| ||  |||
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgag--ggcagaaactttggtattctataagtatattgga-gttaaacgtatatactaatgctgtgtatcttgcccttttcag

upper sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G089630_T04 (Zea mays), 5'ss of exon 3
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCGTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtg-agttgggctgagctttat-ctattggttcattcactaatgccttcagaagttaatattcactttttagccattgacag
| |||| || || || ||  ||||||| |   |  |||| ||| | ||||||||||| |||||||| ||  | ||||||||||| |||||||||||||| ||| ||   |      |  ||| ||||  ||  || |   | |    |   |   | |   |  || | | ||| ||  |||
TCTACCGTTACCTGAACTAGTAAAATTCGCCTTTTTTGCGAACCTGTCTATTGTTGGGATGAATGTAAGCTTGATGTGGAACTCTGTTGGATTCTATCAGgtgcagacagaaacttcgatattctataagtatat-cggaattaaacttgtatactgacgctgtctgtcttgcctttttcag

upper sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 3
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCGTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgggctgagctttatctattggttcattcactaatgcctt-cagaagttaatattcactttttagccattgacag
| | || ||  | || ||| | | |||| ||||  ||||||| ||||| ||||||||||||||||| ||||| ||||||||||| ||||| || ||||| || | | |   | | ||   ||| |   |      |  ||||  || | ||  |||  |||  | | ||     ||| |||
TCTTCCGTTTACGGAGCTTTTGAGATTTATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTTGGTTTTTATCAGgt-attagacatcatctagctctgtaattgtgaaaagaaatgtattgctgattttatgattgtcctgtttttgcttgtcag

upper sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G09810.1 (Arabidopsis thaliana), 5'ss of exon 3
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCGTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgggctgagctttatctattggttcattcactaatgccttcagaagttaatattcactttttagccattgacag
| | || ||  |||| ||||| || ||| ||||  ||||||| || || ||||||||||||||||||||||| ||||||||||| ||||| || ||||| || | |  |  ||   ||| | |  ||   | ||   |  ||        | |   | |   || |||     || ||||
TCTTCCATTTACAGAGCTTCTTAAGTTTATTCTGTTTGCTAATTTTTCGATTGTTGGAATGAATGTTAGTCTTATGTGGAACTCTGTTGGGTTTTATCAGgtaaatgtgtttgctttttgtgttatgtaacgtttcttgttgttggttctaat-ggtgtcttctcttttatgcttaacag

upper sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0072g00080.t01 (Vitis vinifera), 5'ss of exon 2
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCGTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttg-ggctgagctttatctattggttca---ttcact--aatgccttcagaagttaatattcactttttagccattgacag
| | ||| | ||||| ||||| ||||||||  |  |||| |||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| ||   ||  |  ||  || | | | |  | | |   || | |  |||   | |||||||||  ||      |||| |  |      
TCTCCCCCTTCCAGAGCTTCTGAAATTTGTATTATTTGCGAACTTCTCTATTGTTGGAATGAATGTTAGTTTAATGTGGAACTCAGTAGGGTTCTATCAGgtatattctgattgctctgtgtgtttaagcttacattttattgtaataattgcagaagtta-catctctaatttaactgtcag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17153512|gb|BM143445.1|BM143445
EST:     TTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAA                         ATTGCGAAGTTAAGTATGATC
genomic: TTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttggg ... ccattgacagATTGCGAAATTAAGTATGATC